A chromosome-level genome assembly of the Asian arowana, Scleropages formosus

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作者
Jia Li
Chao Bian
Yinchang Hu
Xidong Mu
Xueyan Shen
Vydianathan Ravi
Inna S. Kuznetsova
Ying Sun
Xinxin You
Ying Qiu
Xinhui Zhang
Hui Yu
Yu Huang
Pao Xu
Ruobo Gu
Junmin Xu
László Orbán
Byrappa Venkatesh
Qiong Shi
机构
[1] Shenzhen Key Lab of Marine Genomics,Department of Cytology and Histology
[2] Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals,undefined
[3] BGI,undefined
[4] Key Laboratory of Tropical & Subtropical Fishery Resource Application & Cultivation,undefined
[5] Ministry of Agriculture,undefined
[6] Pearl River Fisheries Research Institute,undefined
[7] Chinese Academy of Fishery Sciences,undefined
[8] Reproductive Genomics Group,undefined
[9] Temasek Life Sciences Laboratory,undefined
[10] Institute of Molecular and Cell Biology,undefined
[11] A*STAR,undefined
[12] Biopolis,undefined
[13] Laboratory of Chromosome Structure and Function,undefined
[14] Biological Faculty,undefined
[15] Saint Petersburg State University,undefined
[16] Freshwater Fisheries Research Center,undefined
[17] Chinese Academy of Fishery Sciences,undefined
[18] BGI-Zhenjiang Institute of Hydrobiology,undefined
[19] Marine Research Center,undefined
[20] College of Life Sciences,undefined
[21] Shenzhen University,undefined
来源
Scientific Data | / 3卷
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摘要
Asian arowana (Scleropages formosus), an ancient teleost belonging to the Order Osteoglossomorpha, has been a valuable ornamental fish with some varieties. However, its biological studies and breeding germplasm have been remarkably limited by the lack of a reference genome. To solve these problems, here we report high-quality genome sequences of three common varieties of Asian arowana (the golden, red and green arowana). We firstly generated a chromosome-level genome assembly of the golden arowana, on basis of the genetic linkage map constructed with the restriction site-associated DNA sequencing (RAD-seq). In addition, we obtained draft genome assemblies of the red and green varieties. Finally, we annotated 22,016, 21,256 and 21,524 protein-coding genes in the genome assemblies of golden, red and green varieties respectively. Our data were deposited in publicly accessible repositories to promote biological research and molecular breeding of Asian arowana.
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