共 35 条
[1]
Henikoff S(1992)Amino acid substitution matrices from protein blocks Proc Nat Acad Sci 89 10915-9
[2]
Henikoff JG(1991)Improved sensitivity of nucleic acid database searches using application-specific scoring matrices Methods 3 66-70
[3]
States DJ(1982)An improved algorithm for matching biological sequences J Mol Biol 162 705-8
[4]
Gish W(1990)Basic local alignment search tool J Mol Biol 215 403-10
[5]
Altschul SF(1997)Using video-oriented instructions to speed up sequence comparison Comput Appl Biosci CABIOS 13 145-50
[6]
Gotoh O(2000)Six-fold speed-up of smith–waterman sequence database searches using parallel processing on common microprocessors Bioinformatics 16 699-706
[7]
Altschul SF(2007)Striped smith–waterman speeds database searches six times over other simd implementations Bioinformatics 23 156-61
[8]
Gish W(2011)Faster smith-waterman database searches with inter-sequence simd parallelisation BMC Bioinformatics 12 221-42
[9]
Miller W(2013)Ssw library: An simd smith-waterman c/c++ library for use in genomic applications PLoS ONE 8 82138-1
[10]
Myers EW(2015)A work stealing based approach for enabling scalable optimal sequence homology detection J Parallel Distributed Comput 79–80 132-12