Assembly and annotation of the Gossypium barbadense L. ‘Pima-S6’ genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes

[21] Pan M(2012)A beginner’s guide to eukaryotic genome annotation Nat Rev Genet 13 329-38

[22] Miller ER(2021)BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of Eukaryotic, Prokaryotic, and viral genomes Mol Biol Evol 38 4647-12

[23] Conover JL(2021)High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement Nat Genet 53 1385-7

[24] Hutmacher RB(2015)Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement Nat Biotechnol 33 531-14

[25] Ulloa M(2019)RaGOO: fast and accurate reference-guided scaffolding of draft genomes Genome Biol 20 1-502

[26] Wright SD(2016)Analysis of root-knot nematode and fusarium wilt disease resistance in cotton (Gossypium spp.) using chromosome substitution lines from two alien species Genetica 144 167-86

[27] Campbell BT(2018)LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization Genome Biol 19 195-100

[28] Percy R(2021)Full-length annotation with multistrategy RNA-seq uncovers transcriptional regulation of lncRNAs in cotton Plant Physiol 185 179-804

[29] Wallace T(2016)Detection and validation of one stable fiber strength QTL on c9 in tetraploid cotton Mol Genet Genomics MGG 291 1625-7

[30] Ulloa M(2014)Introgression genetics and breeding between Upland and Pima cotton: a review Euphytica 198 1-604

[21] Pan M(2012)A beginner’s guide to eukaryotic genome annotation Nat Rev Genet 13 329-38

[22] Miller ER(2021)BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of Eukaryotic, Prokaryotic, and viral genomes Mol Biol Evol 38 4647-12

[23] Conover JL(2021)High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement Nat Genet 53 1385-7

[24] Hutmacher RB(2015)Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement Nat Biotechnol 33 531-14

[25] Ulloa M(2019)RaGOO: fast and accurate reference-guided scaffolding of draft genomes Genome Biol 20 1-502

[26] Wright SD(2016)Analysis of root-knot nematode and fusarium wilt disease resistance in cotton (Gossypium spp.) using chromosome substitution lines from two alien species Genetica 144 167-86

[27] Campbell BT(2018)LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization Genome Biol 19 195-100

[28] Percy R(2021)Full-length annotation with multistrategy RNA-seq uncovers transcriptional regulation of lncRNAs in cotton Plant Physiol 185 179-804

[29] Wallace T(2016)Detection and validation of one stable fiber strength QTL on c9 in tetraploid cotton Mol Genet Genomics MGG 291 1625-7

[30] Ulloa M(2014)Introgression genetics and breeding between Upland and Pima cotton: a review Euphytica 198 1-604