Boolean network inference from time series data incorporating prior biological knowledge

Yip KY(2010)Improved Reconstruction of In Silico Gene Regulatory Networks by Integrating Knockout and Perturbation Data PLOS One 5 e8121-102

Alexandera RP(1998)Genomic regulation modeled as a network with basins of attraction Pac Symp Biocomput 3 89-247

Yan K(2007)Mathematical modeling as a tool for investigating cell cycle control networks Methods 41 238-4025

Gerstein M(2005)Generating Boolean Networks with a Prescribed Attractor Structure Bioinformatics 21 4021-2900

Wuensche A(2008)Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models Bioinformatics 24 2894-34

Sible JC(1993)Culture systems for study of human mammary epithelial cell proliferation, differentiation and transformation Cancer Surv 18 7-66

Tyson JJ(1979)A threshold selection method from gray-level histograms IEEE Trans Sys, Man, Cyber 9 62-3691

Pal R(2004)Epidermal Growth Factor Receptor Stimulation Activates the RNA Binding Protein CUG-BP1 and Increases Expression of Molecular and Cellular Biology 24 3682-851

Ivanov I(2011)-LIP in Mammary Epithelial Cells Mol BioSyst 7 843-2135

Datta A(2006)From biological pathway to regulatorynetworks Bioinformatics 22 2129-undefined

Yip KY(2010)Improved Reconstruction of In Silico Gene Regulatory Networks by Integrating Knockout and Perturbation Data PLOS One 5 e8121-102

Alexandera RP(1998)Genomic regulation modeled as a network with basins of attraction Pac Symp Biocomput 3 89-247

Yan K(2007)Mathematical modeling as a tool for investigating cell cycle control networks Methods 41 238-4025

Gerstein M(2005)Generating Boolean Networks with a Prescribed Attractor Structure Bioinformatics 21 4021-2900

Wuensche A(2008)Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models Bioinformatics 24 2894-34

Sible JC(1993)Culture systems for study of human mammary epithelial cell proliferation, differentiation and transformation Cancer Surv 18 7-66

Tyson JJ(1979)A threshold selection method from gray-level histograms IEEE Trans Sys, Man, Cyber 9 62-3691

Pal R(2004)Epidermal Growth Factor Receptor Stimulation Activates the RNA Binding Protein CUG-BP1 and Increases Expression of Molecular and Cellular Biology 24 3682-851

Ivanov I(2011)-LIP in Mammary Epithelial Cells Mol BioSyst 7 843-2135

Datta A(2006)From biological pathway to regulatorynetworks Bioinformatics 22 2129-undefined