Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)

被引：0
作者：
Cliff Han
Romano Mwirichia
Olga Chertkov
Brittany Held
Alla Lapidus
Matt Nolan
Susan Lucas
Nancy Hammon
Shweta Deshpande
Jan-Fang Cheng
Roxanne Tapia
Lynne Goodwin
Sam Pitluck
Marcel Huntemann
Konstantinos Liolios
Natalia Ivanova
Ioanna Pagani
Konstantinos Mavromatis
Galina Ovchinikova
Amrita Pati
Amy Chen
Krishna Palaniappan
Miriam Land
Loren Hauser
Evelyne-Marie Brambilla
Manfred Rohde
Stefan Spring
Johannes Sikorski
Markus Göker
Tanja Woyke
James Bristow
Jonathan A. Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C. Kyrpides
Hans-Peter Klenk
John C. Detter
机构：
[1] DOE Joint Genome Institute,Bioscience Division
[2] Los Alamos National Laboratory,Biological Data Management and Technology Center
[3] Jomo Kenyatta University of Agriculture and Technology,Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences
[4] Lawrence Berkeley National Laboratory,undefined
[5] Oak Ridge National Laboratory,undefined
[6] DSMZ - German Collection of Microorganisms and Cell Cultures GmbH,undefined
[7] HZI - Helmholtz Centre for Infection Research,undefined
[8] University of California Davis Genome Center,undefined
[9] The University of Queensland,undefined
来源：
Standards in Genomic Sciences | 2011年 / 4卷
关键词：
glycolate-oxidizing; Gram-negative staining with Gram-positive cell wall structure; strictly anaerobic; chemotrophic; mesophilic; non-motile; rod-shaped; spore-forming; GEBA;
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摘要：
Syntrophobotulus glycolicus Friedrich et al. 1996 is currently the only member of the genus Syntrophobotulus within the family Peptococcaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of tree of life. When grown in pure culture with glyoxylate as carbon source the organism utilizes glyoxylate through fermentative oxidation, whereas, when grown in syntrophic co-culture with homoacetogenic or methanogenic bacteria, it is able to oxidize glycolate to carbon dioxide and hydrogen. No other organic or inorganic carbon source is utilized by S. glycolicus. The subdivision of the family Peptococcaceae into genera does not reflect the natural relationships, particularly regarding the genera most closely related to Syntrophobotulus. Both Desulfotomaculum and Pelotomaculum are paraphyletic assemblages, and the taxonomic classification is in significant conflict with the 16S rRNA data. S. glycolicus is already the ninth member of the family Peptococcaceae with a completely sequenced and publicly available genome. The 3,406,739 bp long genome with its 3,370 protein-coding and 69 RNA genes is a part of the GenomicEncyclopedia ofBacteria andArchaea project.
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页码：371 / 380
页数：9
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