Complete chloroplast genome of Caragana intermedia (Fabaceae), an endangered shrub endemic to china

被引：0
作者：
Zi-long Zhang
Li-ying Ma
Hong-bin Yao
Xin Yang
Ji-huai Luo
Xue Gong
Shuo-yue Wei
Quan-fang Li
Wei Wang
Hong-bin Sun
机构：
[1] Key Laboratory of Science and Technology Research and Application,
来源：
Conservation Genetics Resources | 2016年 / 8卷
关键词：
Chloroplast genome; Inverted repeat-lacking clade (IRLC);
D O I：
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学科分类号：
摘要：
Caragana intermedia is an important shrub plant with high ecological and economic value. Here, we reported and analyzed the complete chloroplast (cp) genome of C. intermedia. This cp genome is relatively short (129,331 bp) because it lacks an Inverted Repeat (IR) region. It comprises 111 genes, including four unique rRNAs, 31 tRNAs, and 76 protein-coding genes. Similar to other closely related plastomes, rpl22 and rps16 are absent, and the GC content is relatively low (31.6 %). The phylogenetic analysis suggested that C. intermedia is closely related to the genera of Astragalus.
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页码：459 / 461
页数：2
相关论文
共 18 条
[1]  
Doyle JL(1987)A rapid DNA isolation procedure for small quantities of fresh leaf tissue Phytochem Bull 19 11-15
[2]  
Huang DI(2015)Plann: a command-line application for annotating plastome sequences Appl Plant Sci 3 1500026-780
[3]  
Cronk QCB(2013)MAFFT multiple sequence alignment software version 7: improvements in performance and usability Mol Biol Evol 30 772-2729
[4]  
Katoh K(2013)MEGA6: molecular evolutionary genetics analysis version 6.0 Mol Biol Evol 30 2725-829
[5]  
Standley DM(2008)Velvet: algorithms for de novo short read assembly using de Bruijn graphs Genome Res 18 821-559
[6]  
Tamura K(2009)Phylogeny of Mol Phylogenet Evol 50 547-487
[7]  
Stecher G(2005) (Fabaceae) based on DNA sequence data from Bull Bot Res 25 471-undefined
[8]  
Peterson D(undefined)L, undefined undefined undefined-undefined
[9]  
Filipski A(undefined)S- undefined undefined undefined-undefined
[10]  
Kumar S(undefined)G, and ITS undefined undefined undefined-undefined
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