Genomic re-assessment of the transposable element landscape of the potato genome

[21] Schaeffer ML(2018)Transposons: a blessing curse Curr Opin Plant Biol 42 23-745

[22] Braun BL(2004)MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res 32 1792-367

[23] Campbell DA(2015)A new approach for annotation of transposable elements using small rna mapping Nucleic Acids Res 43 e84-66

[24] Vinnakota AG(2008)LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons BMC Bioinform 9 18-D1151

[25] Sribalusu VV(2011)Considering transposable element diversification in de novo annotation approaches PloS One 6 e16526-D363

[26] Appels R(2019)Dynamic regulation of chromatin topology and transcription by inverted repeat-derived small RNAs in sunflower Proc Natl Acad Sci 116 17578-430

[27] Eversole K(2016)Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes Genome Biol 17 7-410

[28] Feuillet C(2013)Genometools: a comprehensive software library for efficient processing of structured genome annotations IEEE/ACM Trans Comput Biol Bioinform TCBB 10 645-i358

[29] Keller B(2014)Profiling of extensively diversified plant lines reveals distinct plant-specific subclades Plant J 79 385-815

[30] Rogers J(2017)Transposable element influences on gene expression in plants BBA Gene Regul Mech 1860 157-1115

[21] Schaeffer ML(2018)Transposons: a blessing curse Curr Opin Plant Biol 42 23-745

[22] Braun BL(2004)MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res 32 1792-367

[23] Campbell DA(2015)A new approach for annotation of transposable elements using small rna mapping Nucleic Acids Res 43 e84-66

[24] Vinnakota AG(2008)LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons BMC Bioinform 9 18-D1151

[25] Sribalusu VV(2011)Considering transposable element diversification in de novo annotation approaches PloS One 6 e16526-D363

[26] Appels R(2019)Dynamic regulation of chromatin topology and transcription by inverted repeat-derived small RNAs in sunflower Proc Natl Acad Sci 116 17578-430

[27] Eversole K(2016)Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes Genome Biol 17 7-410

[28] Feuillet C(2013)Genometools: a comprehensive software library for efficient processing of structured genome annotations IEEE/ACM Trans Comput Biol Bioinform TCBB 10 645-i358

[29] Keller B(2014)Profiling of extensively diversified plant lines reveals distinct plant-specific subclades Plant J 79 385-815

[30] Rogers J(2017)Transposable element influences on gene expression in plants BBA Gene Regul Mech 1860 157-1115