Evaluation of linkage disequilibrium, population structure, and genetic diversity in the U.S. peanut mini core collection

被引:0
作者
Paul I. Otyama
Andrew Wilkey
Roshan Kulkarni
Teshale Assefa
Ye Chu
Josh Clevenger
Dan J. O’Connor
Graeme C. Wright
Stanley W. Dezern
Gregory E. MacDonald
Noelle L. Anglin
Ethalinda K. S. Cannon
Peggy Ozias-Akins
Steven B. Cannon
机构
[1] Iowa State University,Agronomy Department
[2] USDA-ARS,ORISE Fellow, Corn Insects and Crop Genetics Research Unit
[3] University of Georgia,Institute of Plant Breeding, Genetics, and Genomics
[4] Center for Applied Genetic Technologies,Mars
[5] Peanut Company of Australia,Wrigley Confectionery
[6] University of Florida,Computer Science Department
[7] International Potato Center,Corn Insects and Crop Genetics Research Unit
[8] Iowa State University,undefined
[9] USDA - Agricultural Research Service,undefined
来源
BMC Genomics | / 20卷
关键词
Linkage disequilibrium; Population structure; Phylogenetic network tree; Genetic diversity; Genome wide association;
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  • [1] Ros E(2010)Health benefits of nut consumption Nutrients 2 652-126
  • [2] Moretzsohn MC(2013)A study of the relationships of cultivated peanut (Arachis hypogaea) and its most closely related wild species using intron sequences and microsatellite markers Ann Bot 111 113-85
  • [3] Gouvea EG(2014)Registration of purified accessions for the U.S peanut mini-core germplasm collection J Plant Reg 8 77-96
  • [4] Inglis PW(2016)The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut Nat Genet 48 438-1803
  • [5] Leal-Bertioli SCM(2014)The use of SNP markers for linkage mapping in diploid and tetraploid peanuts G3 4 89-11
  • [6] Valls JFM(2015)SWEEP: a tool for filtering high-quality SNPs in Polyploid crops G3 5 1797-322
  • [7] Bertioli DJ(2013)Single nucleotide polymorphism-based genetic diversity in the reference set of peanut (Arachis spp.) by developing and applying cost-effective kompetitive allele specific polymerase chain reaction genotyping assays Plant Genome 6 1-84
  • [8] Chen CY(2014)Construction of a SNP-based genetic linkage map in cultivated peanut based on large scale marker development using next-generation double-digest restriction-site-associated DNA sequencing (ddRADseq) BMC Genomics 15 351-861
  • [9] Barkley NA(2017)Development and evaluation of a high density genotyping ‘Axiom_Arachis’ array with 58 K SNPs for accelerating genetics and breeding in groundnut Sci Rep 7 40577-374
  • [10] Wang ML(2017)Genome-wide SNP genotyping resolves signatures of selection and tetrasomic recombination in peanut Mol Plant 10 309-100