Exploiting genotyping by sequencing to characterize the genomic structure of the American cranberry through high-density linkage mapping

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作者
Giovanny Covarrubias-Pazaran
Luis Diaz-Garcia
Brandon Schlautman
Joseph Deutsch
Walter Salazar
Miguel Hernandez-Ochoa
Edward Grygleski
Shawn Steffan
Massimo Iorizzo
James Polashock
Nicholi Vorsa
Juan Zalapa
机构
[1] University of Wisconsin,Department of Horticulture
[2] Instituto Nacional de Investigaciones Agrícolas,Department of Statistics
[3] Forestales y Pecuarias,USDA
[4] Campo Experimental Pabellón,ARS, Vegetable Crops Research Unit
[5] University of Wisconsin,Department of Horticultural Sciences, Plants for Human Health Institute
[6] Valley Corporation,Blueberry and Cranberry Research and Extension Center
[7] University of Wisconsin,undefined
[8] North Carolina State University,undefined
[9] USDA-ARS,undefined
[10] Genetic Improvement of Fruits and Vegetables Laboratory,undefined
[11] Rutgers University,undefined
来源
BMC Genomics | / 17卷
关键词
Genotyping by sequencing; Imputation; Pseudo-testcross; Linkage disequilibrium; Segregation distortion; Synteny;
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  • [1] Elshire RJ(2011)A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species PLoS One 6 e19379-59
  • [2] Glaubitz JC(1913)The linear arrangement of six sex-linked factors in Drosophila, as shown by their mode of association J Exp Zoo 14 43-91
  • [3] Sun Q(2009)Mapping genes for complex traits in domestic animals and their use in breeding programmes Nat Rev Genet 10 381-208
  • [4] Poland JA(2012)Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences Am J Bot 99 193-16
  • [5] Kawamoto K(2011)The genome of woodland strawberry (Fragaria vesca) Nat Genet 43 109-800
  • [6] Buckler ES(2005)The map-based sequence of the rice genome Nature 436 793-76
  • [7] Mitchell SE(2009)High-throughput genotyping by whole-genome resequencing Genome Res 19 1068-93
  • [8] Sturtevant AH(2008)Identification of genetic variants using bar-coded multiplexed sequencing Nat Meth 5 887-8
  • [9] Goddard ME(2008)Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology Nucleic Acids Res 36 e122-51
  • [10] Hayes BJ(2007)Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers Genome Res 17 240-96