Expressed sequence tags (ESTs) from young leaves of Metroxylon sagu

被引:0
作者
Ching Ching Wee
Hairul Azman Roslan
机构
[1] Universiti Malaysia Sarawak,Genetic Engineering Laboratory, Department of Molecular Biology, Faculty of Resource Science and Technology
来源
3 Biotech | 2012年 / 2卷
关键词
EST; cDNA; Sequencing; Metroxylon sagu; Sago palm;
D O I
暂无
中图分类号
学科分类号
摘要
Sago palm, or Metroxylon sagu, is a hardy and versatile plant that is able to tolerate many stresses, biotic and abiotic, during its growth. It is one of the plants that are able to grow in waterlogged area where others could not. Apart from that sago palm is also a source of starch, contributes economically to the people and an important export for the state of Sarawak. Despite the importance of sago palm especially in the production of starch and its ability to withstand stresses, so far, not many molecular studies have been reported on sago palm. To study the characters in sago palm, transcriptome analysis was conducted where it would give a better understanding of the plant development through gene expression. Here, we report the construction of a cDNA library and preliminary expressed sequence tags analysis from the young leaves of sago palm. A total of 434 clones were sequenced with inserts ranging from 1,000 to 3,000 bps with primary and amplified titers of 8 × 105 and 1.0 × 109 pfu/ml, respectively. Clustering of these sequences resulted in a set of 372 tentative unigenes comprising 340 singletons and 32 contigs. The database was also annotated with BLAST2GO which showed that majority of the transcripts were involved in primary metabolism and stress tolerance.
引用
收藏
页码:211 / 218
页数:7
相关论文
共 187 条
  • [1] Achard P(2007)The plant stress hormone ethylene controls floral transition via DELLA-dependent regulation of floral meristem-identity genes Proc Natl Acad Sci USA 104 6484-6489
  • [2] Baghour M(1988)Expression of the Plant J 15 765-771
  • [3] Chapple A(1999) abi1-1 mutant allele inhibits proteinase inhibitor wound-induction in tomato Curr Opin Plant Biol 2 352-358
  • [4] Hedden P(2005)The ethylene-response pathway: signal perception to gene regulation Bioinformatics 21 3674-3676
  • [5] Straeten DVD(1997)BLAST2go:a universal tool for annotation, visualization and analysis in functional genomics research Plant J 11 773-782
  • [6] Genschik P(1991)Abscisic acid and jasmonic acid activate wound-inducible genes in potato through separate, organ-specific signal transduction pathways Physiol Biochem Cult Plants 3 250-256
  • [7] Moritz T(2004)Effect of kinetin on phospholipid content in maize seedlings in modified gaseous media Plant Mol Biol Rep 22 437a-437g
  • [8] Harberd NP(1989)RNA extraction from different apple tissues rich in polyphenols and polysaccharides for cDNA library construction Annu Rev Plant Physiol Plant Mol Biol 40 347-369
  • [9] Carrera E(2008)Physiology and molecular biology of phenylpropanoid metabolism Environ Pollut 155 453-463
  • [10] Prat S(2007)Modification of the biochemical pathways of plants induced by ozone: what are the varied routes to change? BMC Genomics 8 381-1184