Metabolic profiling of human lung injury by 1H high-resolution nuclear magnetic resonance spectroscopy of blood serum

被引:0
作者
Chandan Singh
Ratan Kumar Rai
Afzal Azim
Neeraj Sinha
Armin Ahmed
Kritika Singh
Arvind M. Kayastha
A. K. Baronia
Mohan Gurjar
Banani Poddar
Ratender K. Singh
机构
[1] Sanjay Gandhi Post Graduate Institute of Medical Sciences (SGPGIMS) Campus,Centre of Biomedical Research
[2] Sanjay Gandhi Postgraduate Institute of Medical Sciences,Critical Care Medicine
[3] Banaras Hindu University,School of Biotechnology, Faculty of Science
来源
Metabolomics | 2015年 / 11卷
关键词
Acute respiratory distress syndrome; Metabolomics; NMR; Small metabolites; Lipids; PCA;
D O I
暂无
中图分类号
学科分类号
摘要
Acute respiratory distress syndrome (ARDS) contributes substantially to mortality and morbidity in USA and worldwide. Due to limitations in early diagnostics of ARDS by classical methods, there has been need for discovery of novel methods and biomarkers for its characterization. We present here first high-resolution 1H nuclear magnetic resonance (NMR) metabolic profiling of serum from ARDS patients and non ARDS (NARDS) controls to search for novel biomarkers in blood serum for better diagnostics and prognostics. We have carried out study with serum samples from a total of 45 subjects, which included 26 ARDS patients and 19 NARDS controls. Principal component analysis (PCA) and partial least square discriminant analysis (PLS-DA) were performed on 1H NMR spectra of serum for group discrimination between the two. PCA and PLS-DA on 1H NMR spectra of serum clearly discriminated between NARDS control and ARDS diseased samples. In our study, lipid resonances showed major contribution for this separation in loading plots. In order to highlight role of other small molecular weight metabolites, the analysis was also carried out after removing lipids resonances from NMR spectrum. There was significant increase in concentrations of N-acetylglycoproteins (NAC) (p = 0.001), acetoacetate (p = 0.001), lactate (p = 0.001), creatinine (p = 0.003), histidine (p = 0.03), formate (p = 0.04) and aromatic amino acids serum of ARDS patients. Along with small metabolites, lipids play a very important role in this discrimination and can differentiate between two classes. Our study has given new avenue in the metabolic profiling of lung injuries.
引用
收藏
页码:166 / 174
页数:8
相关论文
共 121 条
[21]  
Norrenberg M(1989)Proton nuclear magnetic resonance studies of plasma to determine metabolic status of patients with adult respiratory distress syndrome Clinical Chemistry 35 667-670
[22]  
Vincent JL(1970)Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 Nature 227 680-685
[23]  
Donnelly SC(2010)Quantitative Metabolomics by <sup>1</sup>H-NMR and LC-MS/MS Confirms Altered Metabolic Pathways in Diabetes PLoS ONE 5 e10538-608
[24]  
Engan T(2009)A metabonomic approach to early prognostic evaluation of experimental sepsis by 1H NMR and pattern recognition NMR in Biomedicine 22 601-1036
[25]  
Krane J(2012)Androgen receptor activation results in metabolite signatures of an aggressive prostate cancer phenotype: An NMR-based metabonomics study Metabolomics 8 1026-99
[26]  
Klepp O(2013)MetaboID: A graphical user interface package for assignment of 1H NMR spectra of bodyfluids and tissues Journal of Magnetic Resonance 226 93-1035
[27]  
Kvinnsland S(2003)Future Research Directions in Acute Lung Injury: Summary of a National Heart, Lung, and Blood Institute Working Group American Journal of Respiratory and Critical Care Medicine 167 1027-3090
[28]  
Freund HR(2010)(1)H nuclear magnetic resonance metabolomics analysis identifies novel urinary biomarkers for lung function Journal of Proteomics 9 3083-691
[29]  
Ryan JA(1958)Modified Spin-Echo Method for Measuring Nuclear Relaxation Times Review of Scientific Instruments 29 688-1056
[30]  
Fischer JE(2008)Systems biology: Metabonomics Nature 455 1054-1189