Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids

[1] Schwartz R(2010)Theory and algorithms for the haplotype assembly problem Communin Info Syst 10 23-38

[2] Clark AG(2004)The role of haplotypes in candidate gene studies Genet Epidemiol 27 321-33

[3] Gibbs RA(2003)The international hapmap project Nature 426 789-96

[4] Belmont JW(2002)Detecting recent positive selection in the human genome from haplotype structure Nature 419 832-37

[5] Hardenbol P(2002)Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem Brief Bioinforma 3 23-31

[6] Willis TD(2015)Hapcol: accurate and memory-efficient haplotype assembly from long reads Bioinformatics 32.11 1610-7

[7] Yu F(2014)Probabilistic single-individual haplotyping Bioinformatics 30 379-85

[8] Sabeti PC(2015)Whatshap: Weighted haplotype assembly for future-generation sequencing reads J Comput Biol 22 498-509

[9] Reich DE(2016)On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes J Comput Biol 23 718-36

[10] Higgins JM(2005)Haplotype reconstruction from snp fragments by minimum error correction Bioinformatics 21 2456-62

[1] Schwartz R(2010)Theory and algorithms for the haplotype assembly problem Communin Info Syst 10 23-38

[2] Clark AG(2004)The role of haplotypes in candidate gene studies Genet Epidemiol 27 321-33

[3] Gibbs RA(2003)The international hapmap project Nature 426 789-96

[4] Belmont JW(2002)Detecting recent positive selection in the human genome from haplotype structure Nature 419 832-37

[5] Hardenbol P(2002)Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem Brief Bioinforma 3 23-31

[6] Willis TD(2015)Hapcol: accurate and memory-efficient haplotype assembly from long reads Bioinformatics 32.11 1610-7

[7] Yu F(2014)Probabilistic single-individual haplotyping Bioinformatics 30 379-85

[8] Sabeti PC(2015)Whatshap: Weighted haplotype assembly for future-generation sequencing reads J Comput Biol 22 498-509

[9] Reich DE(2016)On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes J Comput Biol 23 718-36

[10] Higgins JM(2005)Haplotype reconstruction from snp fragments by minimum error correction Bioinformatics 21 2456-62