DNA Sequence-Specific Ligands. 19. Synthesis, Spectral Properties, Virological and Biochemical Studies of DB3(n) Fluorescent Dimeric Trisbenzimidazoles

被引:0
作者
A. F. Arutyunyan
A. A. Kostyukov
S. P. Korolev
M. B. Gottikh
D. N. Kaluzhny
O. Yu. Susova
A. L. Zhuze
机构
[1] Engelhardt Institute of Molecular Biology,
[2] Russian Academy of Sciences,undefined
[3] Emanuel Institute of Biochemical Physics,undefined
[4] Russian Academy of Science,undefined
[5] Department of Chemistry,undefined
[6] Moscow State University,undefined
[7] Belozersky Institute of Physicochemical Biology,undefined
[8] Moscow State University,undefined
[9] Research Institute of Carcinogenesis,undefined
[10] Blokhin National Medical Research Center of Oncology,undefined
来源
Molecular Biology | 2023年 / 57卷
关键词
DNA; sequence-specific minor-groove ligand; fluorescent dimeric trisbenzimidazoles ; (; ); spectral methods; HIV-1 integrase; DNA topoisomerase I;
D O I
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学科分类号
摘要
In this work, we synthesized and characterized the properties of a series of new fluorescent DB3(n) narrow-groove ligands. DB3(n) compounds based on dimeric trisbenzimidazoles have the ability to bind to the AT regions of DNA. The synthesis of DB3(n), whose trisbenzimidazole fragments are linked by oligomethylene linkers of different lengths (n = 1, 5, 9), is based on the condensation of the MB3 monomeric trisbenzimidazole with α,ω-alkyldicarboxylic acids. DB3(n) proved to be effective inhibitors of the catalytic activity of HIV-1 integrase at submicromolar concentrations (0.20–0.30 µM). DB3(n) was found to inhibit the catalytic activity of DNA topoisomerase I at low micromolar concentrations.
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页码:512 / 521
页数:9
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共 131 条
[1]  
Koval V.S.(2020)DNA sequence-specific ligands. XVIII. Synthesis, physico-chemical properties; genetic, virological, and biochemical studies of fluorescent dimeric bisbenzimidazoles DBPA(n) Bioorg. Med. Chem 28 115378-1086
[2]  
Arutyunyan A.F.(2018)An overview of recent advances in duplex DNA recognition by small molecules Beilstein J. Org. Chem 14 1051-40
[3]  
Salyanov V.I.(2019)Recent developments in compounds acting in the DNA minor groove Med. Chem. Comm 10 26-661
[4]  
Kostyukov A.A.(1988)Synthetic and biosynthetic studies on vitamin B J. Nat. Prod. 51 643-2478
[5]  
Melkina O.E.(2000)Synthesis of fluorosugar analogues of 2,5,6-trichloro-1-(β- J. Med. Chem 43 2473-213
[6]  
Zavilgelsky G.B.(2003)-ribofuranosyl)benzimidazole as antivirals with potentially increased glycosidic bond stability J. Med. Chem 46 210-1220
[7]  
Klimova R.R.(2004)Tricyclic benzimidazoles as potent poly(ADP-ribose) polymerase-1 inhibitors Bioorg. Med. Chem. Lett 14 1217-8102
[8]  
Kushch A.A.(2005)Synthesis and biological evaluations of novel benzimidazoles as potential antibacterial agents J. Med. Chem 48 7099-153
[9]  
Korolev S.P.(2004)SAR by MS  discovery of a new class of RNA-binding small molecules for the hepatitis C virus:  internal ribosome entry site IIA subdomain J. Am. Chem. Soc 126 143-1524
[10]  
Agapkina Yu.Yu.(2003)DNA sequence dependent monomer−dimer binding modulation of asymmetric benzimidazole derivatives Nucl. Acids Res. 31 1514-65