Assessing quality and completeness of human transcriptional regulatory pathways on a genome-wide scale

被引:0
|
作者
Evgeny Shmelkov
Zuojian Tang
Iannis Aifantis
Alexander Statnikov
机构
[1] New York University School of Medicine,Department of Pharmacology
[2] New York University School of Medicine,Center for Health Informatics and Bioinformatics
[3] New York University School of Medicine,Howard Hughes Medical Institute and Department of Pathology
[4] New York University School of Medicine,Department of Medicine
来源
关键词
Ingenuity Pathway Analysis; Pathway Database; HUGO Gene Nomenclature Committee; Direct Transcriptional Target; Pathway Studio;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] A Bayesian data fusion based approach for learning genome-wide transcriptional regulatory networks
    Elisabetta Sauta
    Andrea Demartini
    Francesca Vitali
    Alberto Riva
    Riccardo Bellazzi
    BMC Bioinformatics, 21
  • [22] Human genome-wide measurement of drug-responsive regulatory activity
    Johnson, Graham D.
    Barrera, Alejandro
    McDowell, Ian C.
    D'Ippolito, Anthony M.
    Majoros, William H.
    Vockley, Christopher M.
    Wang, Xingyan
    Allen, Andrew S.
    Reddy, Timothy E.
    NATURE COMMUNICATIONS, 2018, 9
  • [23] Human genome-wide measurement of drug-responsive regulatory activity
    Graham D. Johnson
    Alejandro Barrera
    Ian C. McDowell
    Anthony M. D’Ippolito
    William H. Majoros
    Christopher M. Vockley
    Xingyan Wang
    Andrew S. Allen
    Timothy E. Reddy
    Nature Communications, 9
  • [24] MotifMap: a human genome-wide map of candidate regulatory motif sites
    Xie, Xiaohui
    Rigor, Paul
    Baldi, Pierre
    BIOINFORMATICS, 2009, 25 (02) : 167 - 174
  • [25] Genome-wide insights into eukaryotic transcriptional control
    James A Goodrich
    Jennifer F Kugel
    Genome Biology, 11 (6)
  • [26] Genome-Wide Identification of Regulatory RNAs in the Human Pathogen Clostridium difficile
    Soutourina, Olga A.
    Monot, Marc
    Boudry, Pierre
    Saujet, Laure
    Pichon, Christophe
    Sismeiro, Odile
    Semenova, Ekaterina
    Severinov, Konstantin
    Le Bouguenec, Chantal
    Coppee, Jean-Yves
    Dupuy, Bruno
    Martin-Verstraete, Isabelle
    PLOS GENETICS, 2013, 9 (05):
  • [27] Genome-Wide Transcriptional Responses of Mycobacterium to Antibiotics
    Briffotaux, Julien
    Liu, Shengyuan
    Gicquel, Brigitte
    FRONTIERS IN MICROBIOLOGY, 2019, 10
  • [28] Elucidating molecular pathways in human health by genome-wide mutagenesis in mice
    Goodnow, C
    Chaudhry, S
    Miosge, L
    Papathanasiou, P
    Yates, A
    Jun, J
    Wilson, L
    Hardy, J
    Nelms, K
    CLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY, 2003, 30 (07) : A55 - A55
  • [29] Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies
    Cowper-Sallari, Richard
    Cole, Michael D.
    Karagas, Margaret R.
    Lupien, Mathieu
    Moore, Jason H.
    WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE, 2011, 3 (05) : 513 - 526
  • [30] Genome-wide transcriptional profiling of human embryonic stem cells differentiating to cardiomyocytes
    Beqqali, A.
    Kloots, J.
    Ward-van Oostwaard, D.
    Mummery, C.
    Passier, R.
    JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY, 2006, 40 (06) : 990 - 991