Finding semantic patterns in omics data using concept rule learning with an ontology-based refinement operator

[1] Stevens R(2000)Ontology-based knowledge representation for bioinformatics Brief Bioinform 1 398-414

[2] Goble CA(2017)Integrative analysis of omics data Syst Biol 6 1-61

[3] Bechhofer S(2016)More effort—more results: recent advances in integrative ’omics’ data analysis Curr Opin Plant Biol 30 57-50

[4] Österlund T(2007)The obo foundry: coordinated evolution of ontologies to support biomedical data integration Nat Biotechnol 25 1251-8

[5] Cvijovic M(2005)Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles Proc Nat Acad Sci 102 15545-24

[6] Kristiansson E(2000)Gene ontology: tool for the unification of biology Nat Genet 25 25-23

[7] Rajasundaram D(2016)Expansion of the gene ontology knowledgebase and resources Nucleic Acids Res 45 331-97

[8] Selbig J(2007)Supervised machine learning: A review of classification techniques Emerg Artif Intell Appl Comput Eng 160 3-61

[9] Smith B(2003)Learning rule-based models of biological process from gene expression time profiles using gene ontology Bioinformatics 19 1116-62

[10] Ashburner M(2008)Predictive data mining in clinical medicine: current issues and guidelines Int J Med Inform 77 81-30

[1] Stevens R(2000)Ontology-based knowledge representation for bioinformatics Brief Bioinform 1 398-414

[2] Goble CA(2017)Integrative analysis of omics data Syst Biol 6 1-61

[3] Bechhofer S(2016)More effort—more results: recent advances in integrative ’omics’ data analysis Curr Opin Plant Biol 30 57-50

[4] Österlund T(2007)The obo foundry: coordinated evolution of ontologies to support biomedical data integration Nat Biotechnol 25 1251-8

[5] Cvijovic M(2005)Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles Proc Nat Acad Sci 102 15545-24

[6] Kristiansson E(2000)Gene ontology: tool for the unification of biology Nat Genet 25 25-23

[7] Rajasundaram D(2016)Expansion of the gene ontology knowledgebase and resources Nucleic Acids Res 45 331-97

[8] Selbig J(2007)Supervised machine learning: A review of classification techniques Emerg Artif Intell Appl Comput Eng 160 3-61

[9] Smith B(2003)Learning rule-based models of biological process from gene expression time profiles using gene ontology Bioinformatics 19 1116-62

[10] Ashburner M(2008)Predictive data mining in clinical medicine: current issues and guidelines Int J Med Inform 77 81-30