TnseqDiff: identification of conditionally essential genes in transposon sequencing studies

被引：0
|
作者：
Lili Zhao
Mark T. Anderson
Weisheng Wu
Harry L. T. Mobley
Michael A. Bachman
机构：
[1] University of Michigan,Department of Biostatistics
[2] University of Michigan,Department of Microbiology and Immunology, School of medicine
[3] University of Michigan,BRCF Bioinformatics Core
[4] University of Michigan,Department of Pathology, School of medicine
来源：
BMC Bioinformatics | / 18卷
关键词：
Transposon sequencing; Essential gene; Differential test; Tn-Seq; InSeq; CD function;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] Transposon sequencing reveals metabolic pathways essential for Mycobacterium tuberculosis infection
    Block, Alisha M.
    Wiegert, Parker C.
    Namugenyi, Sarah B.
    Tischler, Anna D.
    PLOS PATHOGENS, 2024, 20 (03)
  • [42] Defined Mutant Library Sequencing (DML-Seq) for Identification of Conditional Essential Genes
    Shao, Shuai
    Wei, Lifan
    Xia, Feng
    Zhang, Yuanxing
    Wang, Qiyao
    BIO-PROTOCOL, 2021, 11 (05):
  • [43] Identification of recG genetic interactions in Escherichia coli by transposon sequencing
    Bonde, Nina J.
    Wood, Elizabeth A.
    Myers, Kevin S.
    Place, Michael
    Keck, James L.
    Cox, Michael M.
    JOURNAL OF BACTERIOLOGY, 2023, 205 (12)
  • [44] Genome Scanning for Conditionally Essential Genes in Salmonella enterica Serotype Typhimurium
    Khatiwara, Anita
    Jiang, Tieshan
    Sung, Sam-Sun
    Dawoud, Turki
    Kim, Jeong Nam
    Bhattacharya, Dhruva
    Kim, Hee-Bal
    Ricke, Steven C.
    Kwon, Young Min
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2012, 78 (09) : 3098 - 3107
  • [45] Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance
    Yung, Mimi C.
    Park, Dan M.
    Overton, K. Wesley
    Blow, Matthew J.
    Hoover, Cindi A.
    Smit, John
    Murray, Sean R.
    Ricci, Dante P.
    Christen, Beat
    Bowman, Grant R.
    Jiao, Yongqin
    JOURNAL OF BACTERIOLOGY, 2015, 197 (19) : 3160 - 3172
  • [46] Identification of genes required for the survival of B. fragilis using massive parallel sequencing of a saturated transposon mutant library
    Yaligara Veeranagouda
    Fasahath Husain
    Elizabeth L Tenorio
    Hannah M Wexler
    BMC Genomics, 15
  • [47] Identification of transposon-tagged genes by the random sequencing of Mutator-tagged DNA fragments from Zea mays
    Hanley, S
    Edwards, D
    Stevenson, D
    Haines, S
    Hegarty, M
    Schuch, W
    Edwards, KJ
    PLANT JOURNAL, 2000, 23 (04): : 557 - 566
  • [48] Identification of Genes Required for Swarming Motility in Bacillus subtilis Using Transposon Mutagenesis and High-Throughput Sequencing (TnSeq)
    Sanchez, Sandra
    Snider, Elizabeth, V
    Wang, Xindan
    Kearns, Daniel B.
    JOURNAL OF BACTERIOLOGY, 2022, 204 (06)
  • [49] Identification of genes required for the survival of B. fragilis using massive parallel sequencing of a saturated transposon mutant library
    Veeranagouda, Yaligara
    Husain, Fasahath
    Tenorio, Elizabeth L.
    Wexler, Hannah M.
    BMC GENOMICS, 2014, 15
  • [50] Identification of essential genes in bacteria
    Hillyard, David R.
    Redd, Michael J.
    ADVANCED BACTERIAL GENETICS: USE OF TRANSPOSONS AND PHAGE FOR GENOMIC ENGIEERING, 2007, 421 : 21 - 34
12345