TnseqDiff: identification of conditionally essential genes in transposon sequencing studies

被引:0
|
作者
Lili Zhao
Mark T. Anderson
Weisheng Wu
Harry L. T. Mobley
Michael A. Bachman
机构
[1] University of Michigan,Department of Biostatistics
[2] University of Michigan,Department of Microbiology and Immunology, School of medicine
[3] University of Michigan,BRCF Bioinformatics Core
[4] University of Michigan,Department of Pathology, School of medicine
来源
关键词
Transposon sequencing; Essential gene; Differential test; Tn-Seq; InSeq; CD function;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] TnseqDiff: identification of conditionally essential genes in transposon sequencing studies
    Zhao, Lili
    Anderson, Mark T.
    Wu, Weisheng
    Mobley, Harry L. T.
    Bachman, Michael A.
    BMC BIOINFORMATICS, 2017, 18
  • [2] Normalization of transposon-mutant library sequencing datasets to improve identification of conditionally essential genes
    DeJesus, Michael A.
    Ioerger, Thomas R.
    JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2016, 14 (03)
  • [3] Model-based identification of conditionally-essential genes from transposon-insertion sequencing data
    Sarsani, Vishal
    Aldikacti, Berent
    He, Shai
    Zeinert, Rilee
    Chien, Peter
    Flaherty, Patrick
    PLOS COMPUTATIONAL BIOLOGY, 2022, 18 (03)
  • [4] Comprehensive identification of conditionally essential genes in mycobacteria
    Sassetti, CM
    Boyd, DH
    Rubin, EJ
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (22) : 12712 - 12717
  • [5] Genome-wide identification of essential genes in Mycobacterium intracellulare by transposon sequencing - Implication for metabolic remodeling
    Tateishi, Yoshitaka
    Minato, Yusuke
    Baughn, Anthony D.
    Ohnishi, Hiroaki
    Nishiyama, Akihito
    Ozeki, Yuriko
    Matsumoto, Sohkichi
    SCIENTIFIC REPORTS, 2020, 10 (01)
  • [6] Genome-wide identification of essential genes in Mycobacterium intracellulare by transposon sequencing — Implication for metabolic remodeling
    Yoshitaka Tateishi
    Yusuke Minato
    Anthony D. Baughn
    Hiroaki Ohnishi
    Akihito Nishiyama
    Yuriko Ozeki
    Sohkichi Matsumoto
    Scientific Reports, 10
  • [7] Identification of Genes Required for Resistance to Peptidomimetic Antibiotics by Transposon Sequencing
    Vitale, Alessandra
    Pessi, Gabriella
    Urfer, Matthias
    Locher, Hans H.
    Zerbe, Katja
    Obrecht, Daniel
    Robinson, John A.
    Eberl, Leo
    FRONTIERS IN MICROBIOLOGY, 2020, 11
  • [8] Identification of essential genes by transposon insertion sequencing and genome-scale metabolic model construction in Streptococcus suis
    Zhang, Yongqing
    Gong, Ruotong
    Liang, Menglei
    Zhang, Liangsheng
    Liu, Xiujian
    Zeng, Jingzi
    Yan, Mengli
    Qiu, Dexin
    Zhou, Rui
    Huang, Qi
    MICROBIOLOGY SPECTRUM, 2025,
  • [9] The bare necessities: Uncovering essential and condition-critical genes with transposon sequencing
    Shields, Robert C.
    Jensen, Paul A.
    MOLECULAR ORAL MICROBIOLOGY, 2019, 34 (02) : 39 - 50
  • [10] Rapid identification of essential and nonessential herpesvirus genes by direct transposon mutagenesis
    Brune, W
    Ménard, C
    Hobom, U
    Odenbreit, S
    Messerle, M
    Koszinowski, UH
    NATURE BIOTECHNOLOGY, 1999, 17 (04) : 360 - 364