Insights into the coordination chemistry of antineoplastic doxorubicin with 3d-transition metal ions Zn2+, Cu2+, and VO2+: a study using well-calibrated thermodynamic cycles and chemical interaction quantum chemistry models

被引:0
作者
Julieta Reyna-Luna
Luis Soriano-Agueda
Christiaan Jardinez Vera
Marco Franco-Pérez
机构
[1] Universidad Nacional Autónoma de México,Departamento de Física y Química Teórica, Facultad de Química
[2] Donostia International Physics Center (DIPC),undefined
[3] Laboratorio de Modelado y Simulación Computacional en Nanomedicina,undefined
[4] Escuela Superior de Apan,undefined
[5] Universidad Autónoma del Estado de Hidalgo,undefined
来源
Journal of Computer-Aided Molecular Design | 2023年 / 37卷
关键词
Doxorubicin-transition metal complexes; Thermodynamic solvation cycle; Intramolecular interactions; Theoretical protocol benchmarking; Micro-solvation;
D O I
暂无
中图分类号
学科分类号
摘要
We present a computational strategy based on thermodynamic cycles to predict and describe the chemical equilibrium between the 3d-transition metal ions Zn2+, Cu2+, and VO2+ and the widely used antineoplastic drug doxorubicin. Our method involves benchmarking a theoretical protocol to compute gas-phase quantities using DLPNO Coupled-Cluster calculations as reference, followed by estimating solvation contributions to the reaction Gibbs free energies using both explicit partial (micro)solvation steps for charged solutes and neutral coordination complexes, as well as a continuum solvation procedure for all solutes involved in the complexation process. We rationalized the stability of these doxorubicin-metal complexes by inspecting quantities obtained from the topology of their electron densities, particularly the bond critical points and non-covalent interaction index. Our approach allowed us to identify representative species in solution phase, infer the most likely complexation process for each case, and identify key intramolecular interactions involved in the stability of these compounds. To the best of our knowledge, this is the first study reporting thermodynamic constants for the complexation of doxorubicin with transition metal ions. Unlike other methods, our procedure is computationally affordable for medium-sized systems and provides valuable insights even with limited experimental data. Furthermore, it can be extended to describe the complexation process between 3d-transition metal ions and other bioactive ligands.
引用
收藏
页码:279 / 299
页数:20
相关论文
共 439 条
  • [1] Renfrew AK(2014)undefined Metallomics 6 1324-1335
  • [2] Hassani S(2011)undefined Arch Appl Sci Res 3 296-300
  • [3] Ghahremani H(2011)undefined Lipids Health Dis 10 1-8
  • [4] Bagheri S(2018)undefined J Mol Model 24 1-9
  • [5] Marouane W(2020)undefined J Phys Chem B 124 3355-3370
  • [6] Soussi A(2017)undefined Theoret Chem Acc 136 1-14
  • [7] Murat J-C(2018)undefined Theoret Chem Acc 137 1-16
  • [8] Bezzine S(2021)undefined MRS Adv 6 897-902
  • [9] El Feki A(2013)undefined J Chem Phys 139 134101-3094
  • [10] Monjaraz-Rodríguez A(2005)undefined Chem Rev 105 2999-6396