Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network

被引:0
|
作者
Bolan Linghu
Evan S Snitkin
Zhenjun Hu
Yu Xia
Charles DeLisi
机构
[1] Boston University,Bioinformatics Program
[2] Boston University,Department of Chemistry
来源
Genome Biology | / 10卷
关键词
Disease Gene; Additional Data File; Seed Gene; Candidate Disease Gene; Disease Pair;
D O I
暂无
中图分类号
学科分类号
摘要
We integrate 16 genomic features to construct an evidence-weighted functional-linkage network comprising 21,657 human genes. The functional-linkage network is used to prioritize candidate genes for 110 diseases, and to reliably disclose hidden associations between disease pairs having dissimilar phenotypes, such as hypercholesterolemia and Alzheimer's disease. Many of these disease-disease associations are supported by epidemiology, but with no previous genetic basis. Such associations can drive novel hypotheses on molecular mechanisms of diseases and therapies.
引用
收藏
相关论文
共 50 条
  • [1] Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network
    Linghu, Bolan
    Snitkin, Evan S.
    Hu, Zhenjun
    Xia, Yu
    DeLisi, Charles
    GENOME BIOLOGY, 2009, 10 (09):
  • [2] Genome-wide identification of genes likely to be involved in human genetic disease
    López-Bigas, N
    Ouzounis, CA
    NUCLEIC ACIDS RESEARCH, 2004, 32 (10) : 3108 - 3114
  • [3] Commonality of functional annotation: a method for prioritization of candidate genes from genome-wide linkage studies
    Shriner, Daniel
    Baye, Tesfaye M.
    Padilla, Miguel A.
    Zhang, Shiju
    Vaughan, Laura K.
    Loraine, Ann E.
    NUCLEIC ACIDS RESEARCH, 2008, 36 (04)
  • [4] Lessons from Genome-Wide Search for Disease-Related Genes with Special Reference to HLA-Disease Associations
    Tokunaga, Katsushi
    GENES, 2014, 5 (01) : 84 - 96
  • [5] Genome-wide identification and analysis of candidate genes for disease resistance in tomato
    G. Andolfo
    W. Sanseverino
    R. Aversano
    L. Frusciante
    M. R. Ercolano
    Molecular Breeding, 2014, 33 : 227 - 233
  • [6] Genome-wide identification and analysis of candidate genes for disease resistance in tomato
    Andolfo, G.
    Sanseverino, W.
    Aversano, R.
    Frusciante, L.
    Ercolano, M. R.
    MOLECULAR BREEDING, 2014, 33 (01) : 227 - 233
  • [7] Systematic genome-wide approach to positional candidate cloning for identification of novel human disease genes
    Kiyosawa, H
    Kawashima, T
    Silva, D
    Petrovsky, N
    Hasegawa, Y
    Sakai, K
    Hayashizaki, Y
    INTERNAL MEDICINE JOURNAL, 2004, 34 (03) : 79 - 90
  • [8] Network Properties of Complex Human Disease Genes Identified through Genome-Wide Association Studies
    Barrenas, Fredrik
    Chavali, Sreenivas
    Holme, Petter
    Mobini, Reza
    Benson, Mikael
    PLOS ONE, 2009, 4 (11):
  • [9] Genome-wide associations and metabolic disease: the big revolution
    Doria, Alessandro
    Abumrad, Nada A.
    CURRENT OPINION IN CLINICAL NUTRITION AND METABOLIC CARE, 2008, 11 (04): : 363 - 365
  • [10] Prediction of Disease and Phenotype Associations from Genome-Wide Association Studies
    Lewis, Stephanie N.
    Nsoesie, Elaine
    Weeks, Charles
    Qiao, Dan
    Zhang, Liqing
    PLOS ONE, 2011, 6 (11):