共 224 条
[1]
Land M(2015)Insights from 20 years of bacterial genome sequencing Funct Integr Genomics 15 141-61
[2]
Hauser L(2016)Graphical pan-genome analysis with compressed suffix trees and the Burrows-Wheeler transform Bioinformatics 32 497-504
[3]
Jun SR(2012)GenomeRing: alignment visualization based on SuperGenome coordinates Bioinformatics 28 7-15
[4]
Nookaew I(2005)Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome” Proc Natl Acad Sci U S A 102 13950-32
[5]
Leuze MR(2016)A representation of a compressed de Bruijn graph for pan-genome analysis that enables search Algorithms Mol Biol 11 20-88
[6]
Ahn TH(2016)TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes Bioinformatics 33 4024-70
[7]
Karpinets T(2014)Indexing Graphs for Path Queries with Applications in Genome Research IEEE/ACM Trans Comput Biol Bioinf 11 375-8
[8]
Lund O(2013)Short read alignment with populations of genomes Bioinformatics 29 361-505
[9]
Kora G(2009)Simultaneous alignment of short reads against multiple genomes Genome Biol 10 R98-31
[10]
Wassenaar T(2015)Improved genome inference in the MHC using a population reference graph Nat Genet 47 682-42