MicroTar: predicting microRNA targets from RNA duplexes

被引:0
|
作者
Rahul Thadani
Martti T Tammi
机构
[1] National University of Singapore,Department of Biological Sciences
[2] National University of Singapore,Department of Biochemistry
[3] Tumor and Cell Biology,Karolinska Institutet, Department of Microbiology
来源
关键词
Free Energy; miRNA Target; miRNA Target Prediction; mRNA Secondary Structure; Seed Match;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [31] INTERSTRAND DUPLEXES IN NUCLEAR-RNA
    POGO, AO
    MILLER, KS
    BIOESSAYS, 1986, 5 (04) : 162 - 165
  • [32] Messages on small RNA duplexes in plants
    Taichiro Iki
    Journal of Plant Research, 2017, 130 : 7 - 16
  • [33] RNA DUPLEXES GUIDE BASE CONVERSIONS
    CATTANEO, R
    CURRENT BIOLOGY, 1994, 4 (02) : 134 - 136
  • [34] Spermine Condenses DNA, but Not RNA Duplexes
    Katz, Andrea M.
    Tolokh, Igor S.
    Pabit, Suzette A.
    Baker, Nathan
    Onufriev, Alexey V.
    Pollack, Lois
    BIOPHYSICAL JOURNAL, 2017, 112 (01) : 22 - 30
  • [35] Thermodynamics of single mismatches in RNA duplexes
    Kierzek, R
    Burkard, ME
    Turner, DH
    BIOCHEMISTRY, 1999, 38 (43) : 14214 - 14223
  • [36] Folding RNA/DNA hybrid duplexes
    Lorenz, Ronny
    Hofacker, Ivo L.
    Bernhart, Stephan H.
    BIOINFORMATICS, 2012, 28 (19) : 2530 - 2531
  • [37] Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N1-methylpseudouridine within RNA duplexes
    Dutta, Nivedita
    Sarzynska, Joanna
    Deb, Indrajit
    Lahiri, Ansuman
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2024, 26 (02) : 992 - 999
  • [38] RISC RNA Sequencing for Context-Specific Identification of In Vivo MicroRNA Targets
    Matkovich, Scot J.
    Van Booven, Derek J.
    Eschenbacher, William H.
    Dorn, Gerald W., II
    CIRCULATION RESEARCH, 2011, 108 (01) : 18 - U50
  • [39] Asymmetric RNA duplexes mediate RNA interference in mammalian cells
    Sun, Xiangao
    Rogoff, Harry A.
    Li, Chiang J.
    NATURE BIOTECHNOLOGY, 2008, 26 (12) : 1379 - 1382
  • [40] Base opening in RNA and DNA duplexes: Implication for RNA stability
    Chen, YZ
    Mohan, V
    Griffey, RH
    PHYSICAL REVIEW E, 2000, 61 (05): : 5640 - 5645