Bi-objective integer programming for RNA secondary structure prediction with pseudoknots

被引:0
|
作者
Audrey Legendre
Eric Angel
Fariza Tahi
机构
[1] IBISC,
[2] Univ Evry,undefined
[3] Université Paris-Saclay,undefined
来源
BMC Bioinformatics | / 19卷
关键词
RNA; Secondary structure; Pseudoknot; Integer programming; Bi-objective; Optimal solutions; Sub-optimal solutions;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] An open problem in RNA secondary structure prediction by the comparative approach
    Engelen, S
    Tahi, F
    METMBS '04: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON MATHEMATICS AND ENGINEERING TECHNIQUES IN MEDICINE AND BIOLOGICAL SCIENCES, 2004, : 293 - 299
  • [42] IRfold: An RNA Secondary Structure Prediction Approach
    Hurst, David
    Iliopoulos, Costas S.
    Lim, Zara
    Moraru, Ionut
    ARTIFICIAL INTELLIGENCE APPLICATIONS AND INNOVATIONS, PT I, AIAI 2024, 2024, 711 : 131 - 144
  • [43] A Review on RNA Secondary Structure Prediction Algorithms
    Oluoch, Ian Kings
    Akalin, Abdullah
    Vural, Yilmaz
    Canbay, Yavuz
    2018 INTERNATIONAL CONGRESS ON BIG DATA, DEEP LEARNING AND FIGHTING CYBER TERRORISM (IBIGDELFT), 2018, : 18 - 23
  • [44] Novel Architecture for RNA Secondary Structure Prediction
    Garcia-Martinez, Mario A.
    Posada-Gomez, Ruben
    Alor-Hernandez, Giner
    INTELLIGENT DATA ENGINEERING AND AUTOMATED LEARNING, PROCEEDINGS, 2009, 5788 : 416 - 423
  • [45] Study of RNA Secondary Structure Prediction Algorithms
    Sun, Ying
    Ye, Shenghua
    Lu, Hongwei
    BIOTECHNOLOGY, CHEMICAL AND MATERIALS ENGINEERING, PTS 1-3, 2012, 393-395 : 955 - +
  • [46] DMfold: A Novel Method to Predict RNA Secondary Structure With Pseudoknots Based on Deep Learning and Improved Base Pair Maximization Principle
    Wang, Linyu
    Liu, Yuanning
    Zhong, Xiaodan
    Liu, Haiming
    Lu, Chao
    Li, Cong
    Zhang, Hao
    FRONTIERS IN GENETICS, 2019, 10
  • [47] IMPROVED METHOD FOR RNA SECONDARY STRUCTURE PREDICTION'
    Xue Mei YUAN Yu LUO Lu Hua LAI Xiao Jie XU Institute of Physical Chemistry
    Chinese Chemical Letters, 1993, (08) : 737 - 740
  • [48] Solving the bi-objective capacitated p-median problem with multilevel capacities using compromise programming and VNS
    Irawan, Chandra Ade
    Imran, Arif
    Luis, Martino
    INTERNATIONAL TRANSACTIONS IN OPERATIONAL RESEARCH, 2020, 27 (01) : 361 - 380
  • [49] Bi-objective goal programming for balancing costs vs. nutritional adequacy (vol 9, 1056205, 2022)
    Koenen, Melissa F. F.
    Balvert, Marleen
    Fleuren, Hein
    FRONTIERS IN NUTRITION, 2023, 10
  • [50] HFold: RNA pseudoknotted secondary structure prediction using hierarchical folding
    Jabbari, Hosna
    Condon, Anne
    Pop, Ana
    Pop, Cristina
    Zhao, Yinglei
    Algorithms in Bioinformatics, Proceedings, 2007, 4645 : 323 - 334