Bi-objective integer programming for RNA secondary structure prediction with pseudoknots

被引：0
|
作者：
Audrey Legendre
Eric Angel
Fariza Tahi
机构：
[1] IBISC,
[2] Univ Evry,undefined
[3] Université Paris-Saclay,undefined
来源：
BMC Bioinformatics | / 19卷
关键词：
RNA; Secondary structure; Pseudoknot; Integer programming; Bi-objective; Optimal solutions; Sub-optimal solutions;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] GAknot: RNA secondary structures prediction with pseudoknots using Genetic Algorithm
    Tong, Kwok-Kit
    Cheung, Kwan-Yau
    Lee, Kin-Hong
    Leung, Kwong-Sak
    PROCEEDINGS OF THE 2013 IEEE SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (CIBCB), 2013, : 136 - 142
  • [22] Comparison of dynamic programming and evolutionary algorithms for RNA secondary structure prediction
    Deschênes, A
    Wiese, KC
    Poonian, J
    PROCEEDINGS OF THE 2004 IEEE SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2004, : 214 - 222
  • [23] Bi-objective goal programming for balancing costs vs. nutritional adequacy
    Koenen, Melissa F.
    Balvert, Marleen
    Fleuren, Hein
    FRONTIERS IN NUTRITION, 2022, 9
  • [24] Prediction Nucleic Acid Secondary Structure with Planar Pseudoknots and Genetic Algorithm
    Zhang, Kai
    Huang, Xinquan
    Hu, Wei
    Liu, Jun
    BIO-INSPIRED COMPUTING - THEORIES AND APPLICATIONS, BIC-TA 2014, 2014, 472 : 571 - 577
  • [25] AliNA - a deep learning program for RNA secondary structure prediction
    Nasaev, Shamsudin S.
    Mukanov, Artem R.
    Kuznetsov, Ivan I.
    Veselovsky, Alexander V.
    MOLECULAR INFORMATICS, 2023, 42 (12)
  • [26] A Novel Efficient Simulated Annealing Algorithm for the RNA Secondary Structure Predicting with Pseudoknots
    Zhang Kai
    Lv Yulin
    INTELLIGENT COMPUTING THEORIES AND APPLICATION, PT II, 2018, 10955 : 365 - 370
  • [27] A Mix Integer Programming Model for Bi-objective Single Machine with Total Weighted Tardiness and Electricity Cost under Time-of-use Tariffs
    Kurniawan, B.
    Gozali, A. A.
    Weng, W.
    Fujimura, S.
    2018 IEEE INTERNATIONAL CONFERENCE ON INDUSTRIAL ENGINEERING AND ENGINEERING MANAGEMENT (IEEE IEEM), 2018, : 137 - 141
  • [28] On finding representative non-dominated points for bi-objective integer network flow problems
    Eusebio, A.
    Figueira, J. R.
    Ehrgott, M.
    COMPUTERS & OPERATIONS RESEARCH, 2014, 48 : 1 - 10
  • [29] Fuzzy Bi-Level Multi-Objective Fractional Integer Programming
    Youness, E. A.
    Emam, O. E.
    Hafez, M. S.
    APPLIED MATHEMATICS & INFORMATION SCIENCES, 2014, 8 (06): : 2857 - 2863
  • [30] A New Parameterized Algorithm for Predicting the Secondary Structure of RNA Sequences Including Pseudoknots
    Song, Yinglei
    Liu, Chunmei
    Li, Yongzhong
    COMPUTER JOURNAL, 2015, 58 (11) : 3114 - 3125
12345