Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)

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作者
Amrita Pati
Sabine Gronow
Alla Lapidus
Alex Copeland
Tijana Glavina Del Rio
Matt Nolan
Susan Lucas
Hope Tice
Jan-Fang Cheng
Cliff Han
Olga Chertkov
David Bruce
Roxanne Tapia
Lynne Goodwin
Sam Pitluck
Konstantinos Liolios
Natalia Ivanova
Konstantinos Mavromatis
Amy Chen
Krishna Palaniappan
Miriam Land
Loren Hauser
Yun-Juan Chang
Cynthia D. Jeffries
John C. Detter
Manfred Rohde
Markus Göker
James Bristow
Jonathan A. Eisen
Victor Markowitz
Philip Hugenholtz
Hans-Peter Klenk
Nikos C. Kyrpides
机构
[1] DOE Joint Genome Institute,Bioscience Division
[2] Los Alamos National Laboratory,Biological Data Management and Technology Center
[3] DSMZ - German Collection of Microorganisms and Cell Cultures GmbH,undefined
[4] Lawrence Berkeley National Laboratory,undefined
[5] Oak Ridge National Laboratory,undefined
[6] HZI - Helmholtz Centre for Infection Research,undefined
[7] University of California Davis Genome Center,undefined
来源
Standards in Genomic Sciences | 2010年 / 2卷
关键词
symbiotic; Loisel; nitrogen fixation; micro-anaerophilic; motile; GEBA;
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摘要
Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-fixing Campylobacter species associated with Spartina alterniflora Loisel roots [2]. It is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a type stain of the genus Arcobacter. The 3,192,235 bp genome with its 3,154 protein-coding and 70 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.
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页码:300 / 308
页数:8
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