Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities

被引:0
作者
Van-Nui Nguyen
Kai-Yao Huang
Chien-Hsun Huang
Tzu-Hao Chang
Neil Arvin Bretaña
K Robert Lai
Julia Tzu-Ya Weng
Tzong-Yi Lee
机构
[1] Yuan Ze University,Department of Computer Science and Engineering
[2] Ministry of Health & Welfare,Tao
[3] Taipei Medical University,Yuan Hospital
[4] Yuan Ze University,Graduate Institute of Biomedical Informatics
来源
BMC Bioinformatics | / 16卷
关键词
ubiquitin conjugation; ubiquitination; substrate site specificity; maximal dependence decomposition; profile hidden Markov model;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 136 条
[1]  
Pickart CM(2004)Ubiquitin: structures, functions, mechanisms Bba-Mol Cell Res 1695 55-72
[2]  
Eddins MJ(2005)Ubiquitin and ubiquitin-like proteins as multifunctional signals Nature reviews Molecular cell biology 6 599-609
[3]  
Welchman RL(2005)Ubiquitin-binding domains Nat Rev Mol Cell Bio 6 610-621
[4]  
Gordon C(2004)The ubiquitin-mediated protein degradation pathway in cancer: therapeutic implications Eur J Cancer 40 2217-2229
[5]  
Mayer RJ(1998)The ubiquitin system Annu Rev Biochem 67 425-479
[6]  
Hicke L(1998)Degradation signals for ubiquitin system proteolysis in Saccharomyces cerevisiae Embo J 17 2759-2766
[7]  
Schubert HL(2008)Computational identification of ubiquitylation sites from protein sequences BMC bioinformatics 9 310-380
[8]  
Hill CP(2010)Identification, analysis, and prediction of protein ubiquitination sites Proteins 78 365-8361
[9]  
Burger AM(2011)Prediction of Lysine Ubiquitylation with Ensemble Classifier and Feature Selection Int J Mol Sci 12 8347-1395
[10]  
Seth AK(2012)Prediction of lysine ubiquitination with mRMR feature selection and analysis Amino Acids 42 1387-323