Is this the right normalization? A diagnostic tool for ChIP-seq normalization

被引：0
|
作者：
Claudia Angelini
Ruth Heller
Rita Volkinshtein
Daniel Yekutieli
机构：
[1] Istituto per le Applicazioni del Calcolo “Mauro Picone”,
[2] Department of Statistics and Operations Research Tel Aviv University,undefined
来源：
BMC Bioinformatics | / 16卷
关键词：
Chip-Seq; Diagnostic plots; Normalization;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] ChIP-seq: welcome to the new frontier
    Elaine R Mardis
    Nature Methods, 2007, 4 : 613 - 614
  • [42] ChIP-seq: A Powerful Tool for Studying Protein-DNA Interactions in Plants
    Chen, Xifeng
    Bhadauria, Vijai
    Ma, Bojun
    CURRENT ISSUES IN MOLECULAR BIOLOGY, 2018, 27 : 171 - 179
  • [43] NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods
    Scheepbouwer, Chantal
    Hackenberg, Michael
    van Eijndhoven, Monique A. J.
    Gerber, Alan
    Pegtel, Michiel
    Gomez-Martin, Cristina
    NUCLEIC ACIDS RESEARCH, 2023, 51 (W1) : W372 - W378
  • [44] W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data
    Lan, Xun
    Bonneville, Russell
    Apostolos, Jeff
    Wu, Wangcheng
    Jin, Victor X.
    BIOINFORMATICS, 2011, 27 (03) : 428 - 430
  • [45] ALGAEFUN with MARACAS, microALGAE FUNctional enrichment tool for MicroAlgae RnA-seq and Chip-seq AnalysiS
    Romero-Losada, Ana B.
    Arvanitidou, Christina
    de los Reyes, Pedro
    Garcia-Gonzalez, Mercedes
    Romero-Campero, Francisco J.
    BMC BIOINFORMATICS, 2022, 23 (01)
  • [46] ALGAEFUN with MARACAS, microALGAE FUNctional enrichment tool for MicroAlgae RnA-seq and Chip-seq AnalysiS
    Ana B. Romero-Losada
    Christina Arvanitidou
    Pedro de los Reyes
    Mercedes García-González
    Francisco J. Romero-Campero
    BMC Bioinformatics, 23
  • [47] NORMALIZATION THROUGH NORMALIZATION PRINCIPLE - RIGHT ENDS, WRONG MEANS
    THRONE, JM
    MENTAL RETARDATION, 1975, 13 (05): : 23 - 25
  • [48] CistromeFinder for ChIP-seq and DNase-seq data reuse
    Sun, Hanfei
    Qin, Bo
    Liu, Tao
    Wang, Qixuan
    Liu, Jing
    Wang, Juan
    Lin, Xueqiu
    Yang, Yulin
    Taing, Len
    Rao, Prakash K.
    Brown, Myles
    Zhang, Yong
    Long, Henry W.
    Liu, X. Shirley
    BIOINFORMATICS, 2013, 29 (10) : 1352 - 1354
  • [49] COPAR: A ChIP-Seq Optimal Peak Analyzer
    Tang, Binhua
    Wang, Xihan
    Jin, Victor X.
    BIOMED RESEARCH INTERNATIONAL, 2017, 2017
  • [50] Impact of sequencing depth in ChIP-seq experiments
    Jung, Youngsook L.
    Luquette, Lovelace J.
    Ho, Joshua W. K.
    Ferrari, Francesco
    Tolstorukov, Michael
    Minoda, Aki
    Issner, Robbyn
    Epstein, Charles B.
    Karpen, Gary H.
    Kuroda, Mitzi I.
    Park, Peter J.
    NUCLEIC ACIDS RESEARCH, 2014, 42 (09) : e74
12345