Is this the right normalization? A diagnostic tool for ChIP-seq normalization

被引：0
|
作者：
Claudia Angelini
Ruth Heller
Rita Volkinshtein
Daniel Yekutieli
机构：
[1] Istituto per le Applicazioni del Calcolo “Mauro Picone”,
[2] Department of Statistics and Operations Research Tel Aviv University,undefined
来源：
BMC Bioinformatics | / 16卷
关键词：
Chip-Seq; Diagnostic plots; Normalization;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Is this the right normalization? A diagnostic tool for ChIP-seq normalization
    Angelini, Claudia
    Heller, Ruth
    Volkinshtein, Rita
    Yekutieli, Daniel
    BMC BIOINFORMATICS, 2015, 16
  • [2] Normalization of ChIP-seq data with control
    Kun Liang
    Sündüz Keleş
    BMC Bioinformatics, 13
  • [3] Normalization of ChIP-seq data with control
    Liang, Kun
    Keles, Sunduz
    BMC BIOINFORMATICS, 2012, 13
  • [4] Normalization, bias correction, and peak calling for ChIP-seq
    Diaz, Aaron
    Park, Kiyoub
    Lim, Daniel A.
    Song, Jun S.
    STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY, 2012, 11 (03)
  • [5] Quantitative ChIP-Seq Normalization Reveals Global Modulation of the Epigenome
    Orlando, David A.
    Chen, Mei Wei
    Brown, Victoria E.
    Solanki, Snehakumari
    Choi, Yoon J.
    Olson, Eric R.
    Fritz, Christian C.
    Bradner, James E.
    Guenther, Matthew G.
    CELL REPORTS, 2014, 9 (03): : 1163 - 1170
  • [6] Comparative study on ChIP-seq data: normalization and binding pattern characterization
    Taslim, Cenny
    Wu, Jiejun
    Yan, Pearlly
    Singer, Greg
    Parvin, Jeffrey
    Huang, Tim
    Lin, Shili
    Huang, Kun
    BIOINFORMATICS, 2009, 25 (18) : 2334 - 2340
  • [7] Methods for ChIP-seq Normalization and Their Application for the Analysis of Regulatory Elements in Brain Cells
    Gusev, F. E.
    Andreeva, T. V.
    Rogaev, E. I.
    RUSSIAN JOURNAL OF GENETICS, 2023, 59 (08) : 745 - 753
  • [8] Methods for ChIP-seq Normalization and Their Application for the Analysis of Regulatory Elements in Brain Cells
    F. E. Gusev
    T. V. Andreeva
    E. I. Rogaev
    Russian Journal of Genetics, 2023, 59 : 745 - 753
  • [9] Titration-based normalization of antibody amount improves consistency of ChIP-seq experiments
    Caride, Ariel
    Jang, Jin Sung
    Shi, Geng-Xian
    Lenz, Sam
    Zhong, Jian
    Kim, Kwan Hyun
    Allen, Mariet
    Robertson, Keith D.
    Farrugia, Gianrico
    Ordog, Tamas
    Ertekin-Taner, Nilufer
    Lee, Jeong-Heon
    BMC GENOMICS, 2023, 24 (01)
  • [10] Titration-based normalization of antibody amount improves consistency of ChIP-seq experiments
    Ariel Caride
    Jin Sung Jang
    Geng-Xian Shi
    Sam Lenz
    Jian Zhong
    Kwan Hyun Kim
    Mariet Allen
    Keith D. Robertson
    Gianrico Farrugia
    Tamas Ordog
    Nilüfer Ertekin-Taner
    Jeong-Heon Lee
    BMC Genomics, 24
12345