Graph construction method impacts variation representation and analyses in a bovine super-pangenome

被引：0
|
作者：
Alexander S. Leonard
Danang Crysnanto
Xena M. Mapel
Meenu Bhati
Hubert Pausch
机构：
[1] ETH Zurich,Animal Genomics
来源：
Genome Biology | / 24卷
关键词：
Bovinae; Graph pangenome; Long sequencing reads; Genome assembly; Structural variation; Domestic animals; VNTR profiling;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 8 条
  • [1] Graph construction method impacts variation representation and analyses in a bovine super-pangenome
    Leonard, Alexander S.
    Crysnanto, Danang
    Mapel, Xena M.
    Bhati, Meenu
    Pausch, Hubert
    GENOME BIOLOGY, 2023, 24 (01)
  • [2] Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species
    Li, Ning
    He, Qiang
    Wang, Juan
    Wang, Baike
    Zhao, Jiantao
    Huang, Shaoyong
    Yang, Tao
    Tang, Yaping
    Yang, Shengbao
    Aisimutuola, Patiguli
    Xu, Ruiqiang
    Hu, Jiahui
    Jia, Chunping
    Ma, Kai
    Li, Zhiqiang
    Jiang, Fangling
    Gao, Jie
    Lan, Haiyan
    Zhou, Yongfeng
    Zhang, Xinyan
    Huang, Sanwen
    Fei, Zhangjun
    Wang, Huan
    Li, Hongbo
    Yu, Qinghui
    NATURE GENETICS, 2023, 55 (05) : 852 - +
  • [3] Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species
    Ning Li
    Qiang He
    Juan Wang
    Baike Wang
    Jiantao Zhao
    Shaoyong Huang
    Tao Yang
    Yaping Tang
    Shengbao Yang
    Patiguli Aisimutuola
    Ruiqiang Xu
    Jiahui Hu
    Chunping Jia
    Kai Ma
    Zhiqiang Li
    Fangling Jiang
    Jie Gao
    Haiyan Lan
    Yongfeng Zhou
    Xinyan Zhang
    Sanwen Huang
    Zhangjun Fei
    Huan Wang
    Hongbo Li
    Qinghui Yu
    Nature Genetics, 2023, 55 : 852 - 860
  • [4] Knowledge Graph Construction and Representation Method for Potato Diseases and Pests
    Yang, Wanxia
    Yang, Sen
    Wang, Guanping
    Liu, Yan
    Lu, Jing
    Yuan, Weiwei
    AGRONOMY-BASEL, 2024, 14 (01):
  • [5] Sparse representation-based neighbor graph construction method for locality preserving projection
    Yu, Z. (yuzz@jlu.edu.cn), 1600, Binary Information Press (10):
  • [6] EXTRACTION OF 3D OBJECT FEATURES FROM CAD BOUNDARY REPRESENTATION USING THE SUPER RELATION GRAPH METHOD
    KAO, CY
    KUMARA, SRT
    KASTURI, R
    IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 1995, 17 (12) : 1228 - 1233
  • [7] A task-centric knowledge graph construction method based on multi-modal representation learning for industrial maintenance automation
    Liu, Zengkun
    Lu, Yuqian
    ENGINEERING REPORTS, 2024, 6 (12)
  • [8] A knowledge empowered graph learning feature selection method based on variation propagation effect representation and analysis for human-centric manufacturing systems
    Xu, Qiuhao
    Gao, Pengjie
    Wang, Junliang
    Zhang, Jie
    INTERNATIONAL JOURNAL OF PRODUCTION RESEARCH, 2024,
1