Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays

被引：0
|
作者：
Shingo Suzuki
Naoaki Ono
Chikara Furusawa
Akiko Kashiwagi
Tetsuya Yomo
机构：
[1] Osaka University,Department of Bioinformatics Engineering, Graduate School of Information Science and Technology
[2] Osaka University,Complex Systems Biology Project, ERATO, Japan Science and Technology Corporation
[3] Osaka University,Graduate School of Frontier Biosciences
来源：
BMC Genomics | / 8卷
关键词：
Perfect Match; Probe Intensity; Probe Length; Custom Array; Expression Analysis Technical Manual;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays
    Suzuki, Shingo
    Ono, Naoaki
    Furusawa, Chikara
    Kashiwagi, Akiko
    Yomo, Tetsuya
    BMC GENOMICS, 2007, 8
  • [2] Sensitivity and specificity of five abundance estimators for high-density oligonucleotide microarrays
    James, AC
    Veitch, JG
    Zareh, AR
    Triche, T
    BIOINFORMATICS, 2004, 20 (07) : 1060 - 1065
  • [3] Unbiased characterization of high-density oligonucleotide microarrays using probe-level statistics
    Aimone, JB
    Gage, FH
    JOURNAL OF NEUROSCIENCE METHODS, 2004, 135 (1-2) : 27 - 33
  • [4] High-density oligonucleotide probe arrays
    McGall, GH
    Fidanza, JA
    ADVANCES IN NUCLEIC ACID AND PROTEIN ANALYSES, MANIPULATION, AND SEQUENCING, 2000, 1 : 106 - 110
  • [5] Transcription profiling of the early gravitropic response in Arabidopsis using high-density oligonucleotide probe microarrays
    Moseyko, N
    Zhu, T
    Chang, HS
    Wang, X
    Feldman, LJ
    PLANT PHYSIOLOGY, 2002, 130 (02) : 720 - 728
  • [6] Probe selection for high-density oligonucleotide arrays
    Mei, R
    Hubbell, E
    Bekiranov, S
    Mittmann, M
    Christians, FC
    Shen, MM
    Lu, G
    Fang, J
    Liu, WM
    Ryder, T
    Kaplan, P
    Kulp, D
    Webster, TA
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (20) : 11237 - 11242
  • [7] Thermodynamics of RNA/DNA hybridization in high-density oligonucleotide microarrays
    Carlon, E
    Heim, T
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2006, 362 (02) : 433 - 449
  • [8] Photolithographic synthesis of high-density oligonucleotide probe arrays
    Barone, AD
    Beecher, JE
    Bury, PA
    Chen, C
    Doede, T
    Fidanza, JA
    McGall, GH
    NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS, 2001, 20 (4-7): : 525 - 531
  • [9] Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays
    Thomassen, Gard O. S.
    Rowe, Alexander D.
    Lagesen, Karin
    Lindvall, Jessica M.
    Rognes, Torbjorn
    PLOS ONE, 2009, 4 (06):
  • [10] Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays
    Lu, C
    BMC BIOINFORMATICS, 2004, 5 (1)
12345