Towards fine-scale population stratification modeling based on kernel principal component analysis and random forest

[1] Alexander DH(2009)Fast model-based estimation of ancestry in unrelated individuals Genome Res 19 1655-1664

[2] Novembre J(2012)Random search for hyper-parameter optimization J Mach Learn Res 13 281-305

[3] Lange K(2001)Random forests Mach Learn 45 5-32

[4] Bergstra J(2018)A practical introduction to random forest for genetic association studies in ecology and evolution Mol Ecol Resour 18 755-766

[5] Bengio Y(2003)Population stratification and spurious allelic association Lancet 361 598-604

[6] Breiman L(2012)Random forests for genomic data analysis Genom 99 323-329

[7] Brieuc MS(2005)Population structure, differential bias and genomic control in a large-scale, case-control association study Nat Genet 37 1243-1246

[8] Waters CD(2017)Population stratification in genetic association studies Curr Protoc Hum Genet 95 1-22

[9] Drinan DP(2008)Worldwide human relationships inferred from genome-wide patterns of variation Science 319 1100-1104

[10] Naish KA(2013)Robust methods for population stratification in genome wide association studies BMC Bioinform 14 132-517

[1] Alexander DH(2009)Fast model-based estimation of ancestry in unrelated individuals Genome Res 19 1655-1664

[2] Novembre J(2012)Random search for hyper-parameter optimization J Mach Learn Res 13 281-305

[3] Lange K(2001)Random forests Mach Learn 45 5-32

[4] Bergstra J(2018)A practical introduction to random forest for genetic association studies in ecology and evolution Mol Ecol Resour 18 755-766

[5] Bengio Y(2003)Population stratification and spurious allelic association Lancet 361 598-604

[6] Breiman L(2012)Random forests for genomic data analysis Genom 99 323-329

[7] Brieuc MS(2005)Population structure, differential bias and genomic control in a large-scale, case-control association study Nat Genet 37 1243-1246

[8] Waters CD(2017)Population stratification in genetic association studies Curr Protoc Hum Genet 95 1-22

[9] Drinan DP(2008)Worldwide human relationships inferred from genome-wide patterns of variation Science 319 1100-1104

[10] Naish KA(2013)Robust methods for population stratification in genome wide association studies BMC Bioinform 14 132-517