The utility of MALDI-TOF MS for outbreak investigation in the neonatal intensive care unit

被引:0
作者
Maskit Bar-Meir
Elihay Berliner
Livnat Kashat
David A. Zeevi
Marc V. Assous
机构
[1] Shaare-Zedek Medical Center,Infectious Diseases
[2] Hebrew University,Faculty of Medicine
[3] Shaare-Zedek Medical Center,Pediatrics
[4] Shaare-Zedek Medical Center,The Microbiology Laboratory
[5] Medical Genetics Institute – Shaare-Zedek Medical Center,undefined
来源
European Journal of Pediatrics | 2020年 / 179卷
关键词
MALDI-TOF; Neonatal intensive care unit; Whole-genome sequencing; Outbreak; ESBL-producing ;
D O I
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学科分类号
摘要
Our aim was to evaluate the performance of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), routinely used in the microbiology laboratory for bacterial identification, for bacterial typing in the setting of extended spectrum beta-lactamase producing Klebsiella pneumoniae (ESBL-KP) outbreak in the neonatal intensive care unit (NICU). Isolates from a 2011 outbreak in the NICU were retrieved from frozen stocks and analyzed by MALDI-TOF. The MALDI typing was compared with core genome multilocus sequence typing (cg-MLST). MALDI typing divided the 33 outbreak isolates into 2 clones: sequence type (ST)-290 and 405. These results were in complete agreement with cg-MLST results. The differentiation of the outbreak isolates into two clones correlated with the patients’ location in the NICU, but also with their place of residence.
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页码:1843 / 1849
页数:6
相关论文
共 37 条
[1]  
Patel R(2013)Matrix-assisted laser desorption ionization-time of flight mass spectrometry in clinical microbiology Clin Infect Dis 57 564-572
[2]  
Welker M(2011)Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology Syst Appl Microbiol 34 2-11
[3]  
Moore ER(2002)Identification and discrimination of Staphylococcus aureus strains using matrix-assisted laser desorption/ionization-time of flight mass spectrometry Proteomics 2 747-753
[4]  
Bernardo K(2010)MALDI-TOF-mass spectrometry applications in clinical microbiology Future Microbiol 5 1733-1754
[5]  
Pakulat N(1991)Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes Nucleic Acids Res 19 6823-6831
[6]  
Macht M(2010)Development of a set of multiplex PCR assays for the detection of genes encoding important beta-lactamases in Enterobacteriaceae J Antimicrob Chemother 65 490-495
[7]  
Krut O(2009)FastTree: computing large minimum evolution trees with profiles instead of a distance matrix Mol Biol Evol 26 1641-1650
[8]  
Seifert H(2015)Microbial typing by matrix-assisted laser desorption ionization-time of flight mass spectrometry: do we need guidance for data interpretation? J Clin Microbiol 53 760-765
[9]  
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[10]  
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