Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding

被引：0
|
作者：
Stephen Winters-Hilt
Amanda Davis
Iftekhar Amin
Eric Morales
机构：
[1] University of New Orleans,Department of Computer Science
[2] Children's Hospital,Research Institute for Children
来源：
BMC Bioinformatics | / 8卷
关键词：
Transcription Factor Binding Site; TATA Binding Protein; Finite State Automaton; Dinucleotide Step; Blockade Signal;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding
    Winters-Hilt, Stephen
    Davis, Amanda
    Amin, Iftekhar
    Morales, Eric
    BMC BIOINFORMATICS, 2007, 8 (Suppl 7)
  • [2] Function of the C-terminus of φ29 DNA polymerase in DNA and terminal protein binding
    Truniger, V
    Lázaro, JM
    Salas, M
    NUCLEIC ACIDS RESEARCH, 2004, 32 (01) : 361 - 370
  • [3] DNA and protein footprinting analysis of the modulation of DNA binding by the N-terminal domain of the Saccharomyces cerevisiae TATA binding protein
    Gupta, Sayan
    Cheng, Huiyong
    Mollah, A. K. M. M.
    Jamison, Elizabeth
    Morris, Stephanie
    Chance, Mark R.
    Khrapunov, Sergei
    Brenowitz, Michael
    BIOCHEMISTRY, 2007, 46 (35) : 9886 - 9898
  • [4] Analysis of φ29 DNA polymerase by partial proteolysis:: Binding of terminal protein in the double-stranded DNA channel
    Truniger, V
    Blanco, L
    Salas, M
    JOURNAL OF MOLECULAR BIOLOGY, 2000, 295 (03) : 441 - 453
  • [5] Analysis of DNA Binding by a Eubacterial Zinc Finger Transcription Factor
    McAlister, Victor J.
    Christie, Gail E.
    JOURNAL OF BACTERIOLOGY, 2009, 191 (14) : 4513 - 4521
  • [6] Analysis of transcription factor binding to DNA using microfluidic hydrogels
    Huyhn, Crystal
    Pittman, John
    Thomas, Gloria A.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2013, 245
  • [7] Nanopore Analysis of Single-Stranded Binding Protein Interactions with DNA
    Marshall, Michael M.
    Ruzicka, Jan
    Zahid, Osama K.
    Henrich, Vincent C.
    Taylor, Ethan W.
    Hall, Adam R.
    LANGMUIR, 2015, 31 (15) : 4582 - 4588
  • [8] Structure-based mutational analysis of the C-terminal DNA-Binding domain of human immunodeficiency virus type 1 integrase: Critical residues for protein oligomerization and DNA binding
    Lutzke, RAP
    Plasterk, RHA
    JOURNAL OF VIROLOGY, 1998, 72 (06) : 4841 - 4848
  • [9] Targeting of retroviral integrase by fusion to a heterologous DNA binding domain: In vitro activities and incorporation of a fusion protein into viral particles
    Katz, RA
    Merkel, G
    Skalka, AM
    VIROLOGY, 1996, 217 (01) : 178 - 190
  • [10] IDENTIFICATION AND ANALYSIS OF DNA BINDING SPECIFIC TRANSCRIPTION FACTOR' BINDING SITES IN SUCROSE SYNTHASE PROMOTER
    Mubeen, Hira
    Masood, Ammara
    Wattoo, Javaid Iqbal
    Nasim, Ammara
    Raza, Shahid
    PAKISTAN JOURNAL OF BOTANY, 2019, 51 (04) : 1297 - 1302
12345