Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows

被引：0
|
作者：
Jorge Barriuso
Jose R Valverde
Rafael P Mellado
机构：
[1] Centro Nacional de Biotecnología (CSIC),
来源：
BMC Bioinformatics | / 12卷
关键词：
Multiple Sequence Alignment; Glyphosate; Distance Calculation; Pairwise Alignment; Short Length Sequence;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows
    Barriuso, Jorge
    Valverde, Jose R.
    Mellado, Rafael P.
    BMC BIOINFORMATICS, 2011, 12
  • [2] Comparison of the diversity of anaerobic-cultured gut bacterial communities on different culture media using 16S rDNA sequencing
    Lichtenegger, Anne Sophie
    Posadas-Cantera, Sara
    Badr, Mohamed Tarek
    Haecker, Georg
    JOURNAL OF MICROBIOLOGICAL METHODS, 2024, 224
  • [3] 16S rDNA High Throughput Sequencing Bacterial Diversity Analysis of Cow Mastitis
    Zhang, Xiaoli
    Chang, Liyun
    Zhang, Jun
    Chen, Yanli
    Zhou, Jianying
    Dai, Guang
    Dong, Lixue
    INDIAN JOURNAL OF ANIMAL RESEARCH, 2023, 57 (07) : 851 - 856
  • [4] Analysis of the bacterial floral structure and diversity of Xuanwei ham by 16S rDNA sequencing
    Shan, Luying
    Li, Yinjiao
    Zheng, Shi
    Wei, Yuanmiao
    Shang, Ying
    JOURNAL OF FOOD SAFETY, 2020, 40 (04)
  • [5] Bacterial diversity of soil under eucalyptus assessed by 16S rDNA sequencing analysis
    da Silveira, Erico Leandro
    Pereira, Rodrigo Matheus
    Scaquitto, Denilson Cesar
    Nascimbem Pedrinho, Eliamar Aparecida
    Val-Moraes, Silvana Popeia
    Wickert, Ester
    Carareto-Alves, Lucia Maria
    de Macedo Lemos, Eliana Gertrudes
    PESQUISA AGROPECUARIA BRASILEIRA, 2006, 41 (10) : 1507 - 1516
  • [6] Delineation of the bacterial composition in exogenous endophthalmitis using 16S rDNA sequencing
    Qi, Benxiang
    Zhang, Bi Ning
    Yang, Baoxia
    Chen, Huabo
    Ren, Zhichao
    Ma, Xiubin
    Jing, Junling
    Xia, Tian
    Li, Wenfeng
    Huang, Yusen
    INTERNATIONAL OPHTHALMOLOGY, 2023, 43 (01) : 293 - 304
  • [7] Delineation of the bacterial composition in exogenous endophthalmitis using 16S rDNA sequencing
    Benxiang Qi
    Bi Ning Zhang
    Baoxia Yang
    Huabo Chen
    Zhichao Ren
    Xiubin Ma
    Junling Jing
    Tian Xia
    Wenfeng Li
    Yusen Huang
    International Ophthalmology, 2023, 43 : 293 - 304
  • [8] Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing
    Burton, Aaron S.
    Stahl, Sarah E.
    John, Kristen K.
    Jain, Miten
    Juul, Sissel
    Turner, Daniel J.
    Harrington, Eoghan D.
    Stoddart, David
    Paten, Benedict
    Akeson, Mark
    Castro-Wallace, Sarah L.
    GENES, 2020, 11 (01)
  • [9] Next-Generation Sequencing of the Bacterial 16S rRNA Gene for Forensic Soil Comparison: A Feasibility Study
    Jesmok, Ellen M.
    Hopkins, James M.
    Foran, David R.
    JOURNAL OF FORENSIC SCIENCES, 2016, 61 (03) : 607 - 617
  • [10] Identification of Leptotrichia goodfellowii infective endocarditis by next-generation sequencing of 16S rDNA amplicons
    Lieberman, Joshua A.
    Kurosawa, Kyoko
    SenGupta, Dhruba
    Cookson, Brad T.
    Salipante, Stephen J.
    Busch, David
    COLD SPRING HARBOR MOLECULAR CASE STUDIES, 2021, 7 (01):
12345