Dynamic Partitioning of GATE Monte-Carlo Simulations on EGEE

被引:0
作者
Sorina Camarasu-Pop
Tristan Glatard
Jakub T. Mościcki
Hugues Benoit-Cattin
David Sarrut
机构
[1] Université de Lyon,Creatis
[2] CNRS,Creatis
[3] Inserm,undefined
[4] Université de Lyon,undefined
[5] CNRS,undefined
[6] Inserm,undefined
[7] CERN,undefined
来源
Journal of Grid Computing | 2010年 / 8卷
关键词
GATE; Monte-Carlo simulations; Grid computing; EGEE; Dynamic particle parallelism; Workflows; Pilot jobs;
D O I
暂无
中图分类号
学科分类号
摘要
The EGEE Grid offers the necessary infrastructure and resources for reducing the running time of particle tracking Monte-Carlo applications like GATE. However, efforts are required to achieve reliable and efficient execution and to provide execution frameworks to end-users. This paper presents results obtained with porting the GATE software on the EGEE Grid, our ultimate goal being to provide reliable, user-friendly and fast execution of GATE to radiation therapy researchers. To address these requirements, we propose a new parallelization scheme based on a dynamic partitioning and its implementation in two different frameworks using pilot jobs and workflows. Results show that pilot jobs bring strong improvement w.r.t. regular gLite submission, that the proposed dynamic partitioning algorithm further reduces execution time by a factor of two and that the genericity and user-friendliness offered by the workflow implementation do not introduce significant overhead.
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页码:241 / 259
页数:18
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