Raman Spectroscopic Study of the Conformation and Melting of Poly(dG) · Poly(dC) and Poly(dG-dC) · Poly(dG-dC) in Aqueous Solution

Raman spectroscopic measurements on aqueous solutions of poly(dG) · poly(dC)indicate that the conformation of the polynucleotides in this double helicalcomplex are distributed between the A and B types at room temperature, the Aform being predominant at −15°C and decreasing progressively upon raising thetemperature to 65°C. A reversible pretransition has been found in this complexnear 70°C. Modifications in the spectra at this temperature indicate no majorconformational changes, but rather suggest altered base pairing and hydration ofthe carbonyl groups, accompanied by a slight distortion of the double helix,resulting in a slightly reduced stacking of the cytosine bases. Measurements inself-pressurized solutions of the complex at high temperature show that it meltsat 103°C in 0.1M NaCl solution (107°C in 0.5M NaCl). These values are somewhatlower than those we have determined in the same manner for the complexpoly(dG-dC) · poly(dG-dC): 117°C in 0.1M MgCl2 and 113°C or higher in 0.1MNaCl solution.