NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data

Pal S(2012)Comprehensive molecular characterization of human colon and rectal cancer Nature 487 330-337

Gupta R(2011)Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development Genome Res 21 1260-1272

Kim H(2011)IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data BMC Bioinforma 12 305-1032

Wickramasinghe P(2009)Statistical inferences for isoform expression in RNA-Seq Bioinformatics 25 1026-294

Baubet V(2009)A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level Nucleic Acids Res 37 e75-2223

Showe LC(2012)Alternative transcription and alternative splicing in cancer Pharmacol Ther 136 283-140

Dahmane N(2010)A scaling normalization method for differential expression analysis of RNA-seq data Genome Biol 11 R25-2788

Davuluri RV(2011)Differential expression in RNA-seq: a matter of depth Genome res 21 2213-128

Kim H(2010)From RNA-seq reads to differential expression results Genome biol 11 220-1043

Bi Y(2012)A normalization strategy for comparing tag count data Algorithms Mol Biol 7 5-340

Pal S(2012)Comprehensive molecular characterization of human colon and rectal cancer Nature 487 330-337

Gupta R(2011)Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development Genome Res 21 1260-1272

Kim H(2011)IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data BMC Bioinforma 12 305-1032

Wickramasinghe P(2009)Statistical inferences for isoform expression in RNA-Seq Bioinformatics 25 1026-294

Baubet V(2009)A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level Nucleic Acids Res 37 e75-2223

Showe LC(2012)Alternative transcription and alternative splicing in cancer Pharmacol Ther 136 283-140

Dahmane N(2010)A scaling normalization method for differential expression analysis of RNA-seq data Genome Biol 11 R25-2788

Davuluri RV(2011)Differential expression in RNA-seq: a matter of depth Genome res 21 2213-128

Kim H(2010)From RNA-seq reads to differential expression results Genome biol 11 220-1043

Bi Y(2012)A normalization strategy for comparing tag count data Algorithms Mol Biol 7 5-340