Organelle 16S rRNA amplicon sequencing enables profiling of active gut microbiota in murine model

[11] Flouri T(2007)A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria J Microbiol Methods 69 330-339

[12] Stamatakis A(2016)A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling BMC Genomics 17 1-20

[13] Belheouane M(2018)The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool Microbiome 6 1-13

[14] Vallier M(2012)Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes Appl Environ Microbiol 78 2459-2461

[15] Čepić A(2006)Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB Appl Environ Microbiol 72 5069-5072

[16] Chung CJ(1990)Diversity and origin of J Bacteriol 172 3609-3619

[17] Ibrahim S(2015) species: phylogenetic definition of a family J Microbiol Methods 115 112-120

[18] Baines JF(2020)Microbial rRNA: rDNA gene ratios may be unexpectedly low due to extracellular DNA preservation in soils Nat Biotechnol 38 685-688

[19] Bokulich NA(2015)PICRUSt2 for prediction of metagenome functions Nucleic Acids Res 43 2513-2524

[20] Kaehler BD(1992)Accurate multiplexing and filtering for high-throughput amplicon-sequencing Biol Conserv 61 1-10

[11] Flouri T(2007)A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria J Microbiol Methods 69 330-339

[12] Stamatakis A(2016)A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling BMC Genomics 17 1-20

[13] Belheouane M(2018)The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool Microbiome 6 1-13

[14] Vallier M(2012)Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes Appl Environ Microbiol 78 2459-2461

[15] Čepić A(2006)Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB Appl Environ Microbiol 72 5069-5072

[16] Chung CJ(1990)Diversity and origin of J Bacteriol 172 3609-3619

[17] Ibrahim S(2015) species: phylogenetic definition of a family J Microbiol Methods 115 112-120

[18] Baines JF(2020)Microbial rRNA: rDNA gene ratios may be unexpectedly low due to extracellular DNA preservation in soils Nat Biotechnol 38 685-688

[19] Bokulich NA(2015)PICRUSt2 for prediction of metagenome functions Nucleic Acids Res 43 2513-2524

[20] Kaehler BD(1992)Accurate multiplexing and filtering for high-throughput amplicon-sequencing Biol Conserv 61 1-10