Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

被引：0

作者：

Derek M Bickhart

Benjamin D Rosen

Sergey Koren

Brian L Sayre

Alex R Hastie

Saki Chan

Joyce Lee

Ernest T Lam

Ivan Liachko

Shawn T Sullivan

Joshua N Burton

Heather J Huson

John C Nystrom

Christy M Kelley

Jana L Hutchison

Yang Zhou

Jiajie Sun

Alessandra Crisà

F Abel Ponce de León

John C Schwartz

John A Hammond

Geoffrey C Waldbieser

Steven G Schroeder

George E Liu

Maitreya J Dunham

Jay Shendure

Tad S Sonstegard

Adam M Phillippy

Curtis P Van Tassell

Timothy P L Smith

机构：

[1] Cell Wall Biology and Utilization Laboratory,Department of Biology

[2] ARS USDA,Department of Genome Sciences

[3] Animal Genomics and Improvement Laboratory,Department of Animal Science

[4] ARS USDA,Department of Animal Science

[5] Genome Informatics Section,undefined

[6] Computational and Statistical Genomics Branch,undefined

[7] National Human Genome Research Institute,undefined

[8] Virginia State University,undefined

[9] BioNano Genomics,undefined

[10] University of Washington School of Medicine,undefined

[11] Phase Genomics,undefined

[12] Cornell University,undefined

[13] US Meat Animal Research Center,undefined

[14] ARS USDA,undefined

[15] Clay Center,undefined

[16] Shaanxi Key Laboratory of Agricultural Molecular Biology,undefined

[17] College of Animal Science and Technology,undefined

[18] Northwest A&F University,undefined

[19] South China Agricultural University,undefined

[20] Tianhe,undefined

[21] Guangzhou,undefined

[22] China.,undefined

[23] Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria (CREA)–Animal Production Research Centre,undefined

[24] University of Minnesota,undefined

[25] Livestock Viral Diseases Programme,undefined

[26] The Pirbright Institute,undefined

[27] Warmwater Aquaculture Research Unit,undefined

[28] ARS USDA,undefined

[29] Howard Hughes Medical Institute,undefined

[30] Recombinetics,undefined

[31] Inc.,undefined

来源：

Nature Genetics | 2017年 / 49卷

关键词：

D O I：

暂无

中图分类号：

学科分类号：

摘要：

Adam Phillippy, Curtis Van Tassell, Timothy Smith and colleagues present a new reference genome assembly for the domestic goat using a pipeline that improves contiguity of the assembly by more than 250-fold. The pipeline uses a combination of short- and long-read sequencing, optical mapping, and chromatin interaction mapping.

引用

页码：643 / 650

页数：7

共 42 条

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[30] DE NOVO ASSEMBLY OF THE MAJOR HISTOCOMPATIBILTTY COMPLEX USING SINGLE-MOLECULE REAL-TIME SEQUENCING OF LARGE CONTIGUOUS DNA FRAGMENTS CAPTURED BY TARGETED REGION SPECIFIC EXTRACTION.
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