Genomic multiple sequence alignments: refinement using a genetic algorithm

被引:0
|
作者
Chunlin Wang
Elliot J Lefkowitz
机构
[1] University of Alabama at Birmingham,Department of Microbiology
来源
关键词
Genetic Algorithm; Multiple Sequence Alignment; Message Passing Interface; Alignment Quality; Fuzzy Region;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [31] Improved Multiple Sequence Alignments Using Coupled Pattern Mining
    Hossain, K. S. M. Tozammel
    Patnaik, Debprakash
    Laxman, Srivatsan
    Jain, Prateek
    Bailey-Kellogg, Chris
    Ramakrishnan, Naren
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2013, 10 (05) : 1098 - 1112
  • [32] Genetic Map Refinement Using a Comparative Genomic Approach
    Bertrand, Denis
    Blanchette, Mathieu
    El-Mabrouk, Nadia
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2009, 16 (10) : 1475 - 1486
  • [33] An algorithm for Multiple and Global Alignments
    Elloumi, Mourad
    Mokaddem, Ahmed
    BIOINFORMATICS RESEARCH AND DEVELOPMENT, PROCEEDINGS, 2008, 13 : 479 - 488
  • [34] Two-phase quantum based evolutionary algorithm for multiple sequence alignments
    Huo, Hongwei
    Stojkovic, Vojislav
    2006 INTERNATIONAL CONFERENCE ON COMPUTATIONAL INTELLIGENCE AND SECURITY, PTS 1 AND 2, PROCEEDINGS, 2006, : 374 - 379
  • [35] A New Genetic Algorithm Using Gap Matrixes for Multiple Sequence Alignment
    Zhang, Jin
    Wang, Zhen
    ADVANCES IN INFORMATION TECHNOLOGY AND EDUCATION, PT I, 2011, 201 : 232 - +
  • [36] Progressive Alignment Method Using Genetic Algorithm for Multiple Sequence Alignment
    Naznin, Farhana
    Sarker, Ruhul
    Essam, Daryl
    IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, 2012, 16 (05) : 615 - 631
  • [37] Assessing the Discordance of Multiple Sequence Alignments
    Prakash, Amol
    Tompa, Martin
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2009, 6 (04) : 542 - 551
  • [38] Optimizing multiple sequence alignments using a genetic algorithm based on three objectives: structural information, non-gaps percentage and totally conserved columns
    Ortuno, Francisco M.
    Valenzuela, Olga
    Rojas, Fernando
    Pomares, Hector
    Florido, Javier P.
    Urquiza, Jose M.
    Rojas, Ignacio
    BIOINFORMATICS, 2013, 29 (17) : 2112 - 2121
  • [39] Evaluation measures of multiple sequence alignments
    Gonnet, GH
    Korostensky, C
    Benner, S
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2000, 7 (1-2) : 261 - 276
  • [40] Evolving better multiple sequence alignments
    Sheneman, L
    Foster, JA
    GENETIC AND EVOLUTIONARY COMPUTATION - GECCO 2004, PT 1, PROCEEDINGS, 2004, 3102 : 449 - 460