Characterization of missing values in untargeted MS-based metabolomics data and evaluation of missing data handling strategies

被引:0
|
作者
Kieu Trinh Do
Simone Wahl
Johannes Raffler
Sophie Molnos
Michael Laimighofer
Jerzy Adamski
Karsten Suhre
Konstantin Strauch
Annette Peters
Christian Gieger
Claudia Langenberg
Isobel D. Stewart
Fabian J. Theis
Harald Grallert
Gabi Kastenmüller
Jan Krumsiek
机构
[1] Helmholtz-Zentrum München,Institute of Computational Biology
[2] Helmholtz Zentrum München,Institute of Epidemiology II, German Research Center for Environmental Health
[3] Helmholtz Zentrum München,Research Unit of Molecular Epidemiology, German Research Center for Environmental Health
[4] German Center for Diabetes Research (DZD e.V.),Institute of Bioinformatics and Systems Biology
[5] Helmholtz-Zentrum München,Institute of Experimental Genetics, Genome Analysis Center
[6] Helmholtz Zentrum München,Lehrstuhl für Experimentelle Genetik
[7] Technische Universität München,Department of Physiology and Biophysics
[8] German Center for Cardiovascular Disease Research (DZHK e.V.),Institute of Genetic Epidemiology
[9] Weill Cornell Medical College in Qatar,Chair of Genetic Epidemiology, Institute of Medical Informatics, Biometry and Epidemiology
[10] Helmholtz Zentrum München–German Research Center for Environmental Health,MRC Epidemiology Unit
[11] Ludwig-Maximilians-University,Department of Mathematics
[12] University of Cambridge,Institute for Computational Biomedicine, Englander Institute for Precision Medicine, Department of Physiology and Biophysics
[13] Technische Universität München,undefined
[14] Weill Cornell Medicine,undefined
来源
Metabolomics | 2018年 / 14卷
关键词
Untargeted metabolomics; Missing values imputation; Limit of detection; Batch effects; K-nearest neighbor; Mass spectrometry;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Characterization of missing values in untargeted MS-based metabolomics data and evaluation of missing data handling strategies
    Kieu Trinh Do
    Wahl, Simone
    Raffler, Johannes
    Molnos, Sophie
    Laimighofer, Michael
    Adamski, Jerzy
    Suhre, Karsten
    Strauch, Konstantin
    Peters, Annette
    Gieger, Christian
    Langenberg, Claudia
    Stewart, Isobel D.
    Theis, Fabian J.
    Grallert, Harald
    Kastenmueller, Gabi
    Krumsiek, Jan
    METABOLOMICS, 2018, 14 (10)
  • [2] A Workflow for Missing Values Imputation of Untargeted Metabolomics Data
    Faquih, Tariq
    van Smeden, Maarten
    Luo, Jiao
    le Cessie, Saskia
    Kastenmueller, Gabi
    Krumsiek, Jan
    Noordam, Raymond
    van Heemst, Diana
    Rosendaal, Frits R.
    van Hylckama Vlieg, Astrid
    Willems van Dijk, Ko
    Mook-Kanamori, Dennis O.
    METABOLITES, 2020, 10 (12) : 1 - 23
  • [3] Handling missing values in trait data
    Johnson, Thomas F.
    Isaac, Nick J. B.
    Paviolo, Agustin
    Gonzalez-Suarez, Manuela
    GLOBAL ECOLOGY AND BIOGEOGRAPHY, 2021, 30 (01): : 51 - 62
  • [4] NOREVA: normalization and evaluation of MS-based metabolomics data
    Li, Bo
    Tang, Jing
    Yang, Qingxia
    Li, Shuang
    Cui, Xuejiao
    Li, Yinghong
    Chen, Yuzong
    Xue, Weiwei
    Li, Xiaofeng
    Zhu, Feng
    NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) : W162 - W170
  • [5] Missing value imputation strategies for metabolomics data
    Grace Armitage, Emily
    Godzien, Joanna
    Alonso-Herranz, Vanesa
    Lopez-Gonzalvez, Angeles
    Barbas, Coral
    ELECTROPHORESIS, 2015, 36 (24) : 3050 - 3060
  • [6] Strategies for handling missing data in randomised trials
    Ian R White
    Trials, 12 (Suppl 1)
  • [7] Model-driven data curation pipeline for LC–MS-based untargeted metabolomics
    Gabriel Riquelme
    Emmanuel Ezequiel Bortolotto
    Matías Dombald
    María Eugenia Monge
    Metabolomics, 19
  • [8] HANDLING OF MISSING DATA
    Torres, F.
    BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY, 2011, 109 : 17 - 17
  • [9] Handling of Missing Data
    Budhiraja, Pooja
    Kaplan, Bruce
    Mustafa, Reem A.
    TRANSPLANTATION, 2020, 104 (01) : 24 - 26
  • [10] Handling missing data
    不详
    CURRENT PROBLEMS IN CANCER, 2005, 29 (06) : 317 - 325