Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering

被引:0
|
作者
Oscar Franzén
Jianzhong Hu
Xiuliang Bao
Steven H. Itzkowitz
Inga Peter
Ali Bashir
机构
[1] Icahn School of Medicine at Mount Sinai,Department of Genetics and Genomic Sciences
[2] Icahn School of Medicine at Mount Sinai,Division of Gastroenterology, Department of Medicine
来源
Microbiome | / 3卷
关键词
Microbiome; 16S rRNA gene sequencing; OTU picking;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] 16S rRNA gene amplicon sequencing data from the gut microbiota of adolescent Afghan refugees
    Shahzad, Muhammad
    Saeedullah, Anum
    Khan, Muhammad Shabbir
    Ahmad, Habab Ali
    Iddrissu, Ishawu
    Andrews, Simon C.
    DATA IN BRIEF, 2024, 55
  • [42] Reprocessing 16S rRNA Gene Amplicon Sequencing Studies: (Meta)Data Issues, Robustness, and Reproducibility
    Kang, Xiongbin
    Deng, Dong Mei
    Crielaard, Wim
    Brandt, Bernd W.
    FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2021, 11
  • [43] Improving environmental monitoring of Vibrionaceae in coastal ecosystems through 16S rRNA gene amplicon sequencing
    Banchi, Elisa
    Manna, Vincenzo
    Fonti, Viviana
    Fabbro, Cinzia
    Celussi, Mauro
    ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 2022, 29 (44) : 67466 - 67482
  • [44] Seasonal dynamics of lotic bacterial communities assessed by 16S rRNA gene amplicon deep sequencing
    Lisa Paruch
    Adam M. Paruch
    Hans Geir Eiken
    Monica Skogen
    Roald Sørheim
    Scientific Reports, 10
  • [45] Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing
    Tourlousse, Dieter M.
    Yoshiike, Satowa
    Ohashi, Akiko
    Matsukura, Satoko
    Noda, Naohiro
    Sekiguchi, Yuji
    NUCLEIC ACIDS RESEARCH, 2017, 45 (04) : e23
  • [46] Influence of PCR cycle number on 16S rRNA gene amplicon sequencing of low biomass samples
    Witzke, Monica C.
    Gullic, Alexis
    Yang, Peggy
    Bivens, Nathan J.
    Adkins, Pamela R. F.
    Ericsson, Aaron C.
    JOURNAL OF MICROBIOLOGICAL METHODS, 2020, 176
  • [47] Comprehensive Assessment of 16S rRNA Gene Amplicon Sequencing for Microbiome Profiling across Multiple Habitats
    Zhang, Wenke
    Fan, Xiaoqian
    Shi, Haobo
    Li, Jian
    Zhang, Mingqian
    Zhao, Jin
    Su, Xiaoquan
    MICROBIOLOGY SPECTRUM, 2023, 11 (03):
  • [48] Bacterial communities of Antarctic lichens explored by gDNA and cDNA 16S rRNA gene amplicon sequencing
    Woltynska, Aleksandra
    Gawor, Jan
    Olech, Maria A.
    Gorniak, Dorota
    Grzesiak, Jakub
    FEMS MICROBIOLOGY ECOLOGY, 2023, 99 (03)
  • [49] 16S rRNA Gene Amplicon Sequencing of Gut Microbiota Affected by Four Probiotic Strains in Mice
    Ren, Jianwei
    He, Fang
    Yu, Detao
    Xu, Hang
    Li, Nianfeng
    Cao, Zhi
    Wen, Jianxin
    VETERINARY SCIENCES, 2023, 10 (04)
  • [50] Identification of age-associated microbial changes via long-read 16S sequencing
    Toh, Kai Yee
    Toh, Tzi Shin
    Chua, Khi Pin
    Rajakumar, Priscilla
    Lee, Jonathan Wei Jie
    Chong, Chun Wie
    GUT PATHOGENS, 2024, 16 (01):