Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering

被引:0
|
作者
Oscar Franzén
Jianzhong Hu
Xiuliang Bao
Steven H. Itzkowitz
Inga Peter
Ali Bashir
机构
[1] Icahn School of Medicine at Mount Sinai,Department of Genetics and Genomic Sciences
[2] Icahn School of Medicine at Mount Sinai,Division of Gastroenterology, Department of Medicine
来源
Microbiome | / 3卷
关键词
Microbiome; 16S rRNA gene sequencing; OTU picking;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering
    Franzen, Oscar
    Hu, Jianzhong
    Bao, Xiuliang
    Itzkowitz, Steven H.
    Peter, Inga
    Bashir, Ali
    MICROBIOME, 2015, 3 : 43
  • [2] Erratum to: Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering
    Oscar Franzén
    Jianzhong Hu
    Xiuliang Bao
    Steven H. Itzkowitz
    Inga Peter
    Ali Bashir
    Microbiome, 3
  • [3] Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering (vol 3, 43, 2015)
    Franzen, Oscar
    Hu, Jianzhong
    Bao, Xiuliang
    Itzkowitz, Steven H.
    Peter, Inga
    Bashir, Ali
    MICROBIOME, 2015, 3
  • [4] Microbiome of periodontitis and peri-implantitis before and after therapy: Long-read 16S rRNA gene amplicon sequencing
    Yu, Pei-Shiuan
    Tu, Che-Chang
    Wara-aswapati, Nawarat
    Wang, Chen-Ying
    Tu, Yu-Kang
    Hou, Hsin-Han
    Ueno, Takaaki
    Chen, I-Hui
    Fu, Kuan-Lun
    Li, Huei-Ying
    Chen, Yi-Wen
    JOURNAL OF PERIODONTAL RESEARCH, 2024, 59 (04) : 657 - 668
  • [5] A microbiome survey of contrasting potato terroirs using 16S rRNA long-read sequencing
    Boutsika, Anastasia
    Xanthopoulou, Aliki
    Tanou, Georgia
    Zacharatou, Maria -Evangelia
    Vernikos, Michalis
    Nianiou-Obeidat, Irini
    Ganopoulos, Ioannis
    Mellidou, Ifigeneia
    PLANT AND SOIL, 2024, 505 (1-2) : 431 - 448
  • [6] Improved resolution of microbial diversity in deep-sea surface sediments using PacBio long-read 16S rRNA gene sequencing
    Gao, Jie
    Wang, Ziming
    Deng, Wenjie
    Sa, Boxuan
    Chen, Xiaoxia
    Cai, Ruanhong
    Yan, Yi
    Jiao, Nianzhi
    Leung, Elaine Lai-Han
    Liu, Di
    Yan, Wei
    MSPHERE, 2024, 9 (12)
  • [7] Long-read 16S rRNA amplicon sequencing reveals microbial characteristics in patients with colorectal adenomas and carcinoma lesions in Egypt
    El Leithy, Asmaa A.
    Youssef, Amira Salah El-Din
    Nassar, Auhood
    Aziz, Ramy K.
    Khaled, Nadin M.
    Mahrous, Mina T.
    Farahat, Ghobrial N.
    Mohamed, Aya H.
    Bakr, Yasser Mabrouk
    GUT PATHOGENS, 2025, 17 (01):
  • [8] Comparative evaluation of analytical pipelines for illumina short- and nanopore long-read 16S rRNA gene amplicon sequencing with mock microbial communities
    Ota, Yusuke
    Yasunaga, Kei
    Mahazu, Samiratu
    Prah, Isaac
    Nagai, Satoshi
    Hayashi, Takaya
    Suzuki, Masato
    Yoshida, Mitsunori
    Hoshino, Yoshihiko
    Akeda, Yukihiro
    Suzuki, Toshihiko
    Gu, Yoshiaki
    Saito, Ryoichi
    JOURNAL OF MICROBIOLOGICAL METHODS, 2024, 221
  • [9] 16S rRNA long-read nanopore sequencing is feasible and reliable for endometrial microbiome analysis
    Oberle, Anna
    Urban, Lara
    Falch-Leis, Stefanie
    Ennemoser, Chiara
    Nagai, Yoko
    Ashikawa, Kyota
    Ulm, Patricia A.
    Hengstschlaeger, Markus
    Feichtinger, Michael
    REPRODUCTIVE BIOMEDICINE ONLINE, 2021, 42 (06) : 1097 - 1107
  • [10] Community analysis of picocyanobacteria in an oligotrophic lake by cloning 16S rRNA gene and 16S rRNA gene amplicon sequencing
    Fujimoto, Naoshi
    Mizuno, Keigo
    Yokoyama, Tomoki
    Ohnishi, Akihiro
    Suzuki, Masaharu
    Watanabe, Satoru
    Komatsu, Kenji
    Sakata, Yoichi
    Kishida, Naohiro
    Akiba, Michihiro
    Matsukura, Satoko
    JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY, 2015, 61 (05): : 171 - 176