Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling

被引:0
|
作者
Tracy M. Yamawaki
Daniel R. Lu
Daniel C. Ellwanger
Dev Bhatt
Paolo Manzanillo
Vanessa Arias
Hong Zhou
Oh Kyu Yoon
Oliver Homann
Songli Wang
Chi-Ming Li
机构
[1] Genome Analysis Unit,
[2] Amgen Research,undefined
[3] Oncology/Inflammation,undefined
[4] Amgen Research,undefined
来源
BMC Genomics | / 22卷
关键词
Single cell; Transcriptomics; Single-cell RNA-seq; High throughput sequencing; Immune-cell profiling;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] An interpretable framework for clustering single-cell RNA-Seq datasets
    Jesse M. Zhang
    Jue Fan
    H. Christina Fan
    David Rosenfeld
    David N. Tse
    BMC Bioinformatics, 19
  • [42] Improving replicability in single-cell RNA-Seq cell type discovery with Dune
    de Bezieux, Hector Roux
    Street, Kelly
    Fischer, Stephan
    Van den Berge, Koen
    Chance, Rebecca
    Risso, Davide
    Gillis, Jesse
    Ngai, John
    Purdom, Elizabeth
    Dudoit, Sandrine
    BMC BIOINFORMATICS, 2024, 25 (01):
  • [43] Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq
    Raevskiy, Mikhail
    Yanvarev, Vladislav
    Jung, Sascha
    Del Sol, Antonio
    Medvedeva, Yulia A.
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (07)
  • [44] An interpretable framework for clustering single-cell RNA-Seq datasets
    Zhang, Jesse M.
    Fan, Jue
    Fan, Christina
    Rosenfeld, David
    Tse, David N.
    BMC BIOINFORMATICS, 2018, 19
  • [45] Power in Numbers: Single-Cell RNA-Seq Strategies to Dissect Complex Tissues
    Birnbaum, Kenneth D.
    ANNUAL REVIEW OF GENETICS, VOL 52, 2018, 52 : 203 - 221
  • [46] Integrated Analysis of Single-Cell RNA-Seq and Bulk RNA-Seq Combined with Multiple Machine Learning Identified a Novel Immune Signature in Diabetic
    Peng, Yue-Ling
    Zhang, Yan
    Pang, Lin
    Dong, Ya-Fang
    Li, Mu -Ye
    Liao, Hui
    Li, Rong-Shan
    DIABETES METABOLIC SYNDROME AND OBESITY, 2023, 16 : 1669 - 1684
  • [47] Bubble: a fast single-cell RNA-seq imputation using an autoencoder constrained by bulk RNA-seq data
    Chen, Siqi
    Yan, Xuhua
    Zheng, Ruiqing
    Li, Min
    BRIEFINGS IN BIOINFORMATICS, 2023, 24 (01)
  • [48] Single-cell RNA-seq in diabetic foot ulcer wound healing
    Dong, Yan
    Wang, Mengting
    Wang, Qianqian
    Cao, Xiaoliang
    Chen, Peng
    Gong, Zhenhua
    WOUND REPAIR AND REGENERATION, 2024, 32 (06) : 880 - 889
  • [49] Current annotation strategies for T cell phenotyping of single-cell RNA-seq data
    Mullan, Kerry A.
    de Vrij, Nicky
    Valkiers, Sebastiaan
    Meysman, Pieter
    FRONTIERS IN IMMUNOLOGY, 2023, 14
  • [50] scReClassify: post hoc cell type classification of single-cell rNA-seq data
    Kim, Taiyun
    Lo, Kitty
    Geddes, Thomas A.
    Kim, Hani Jieun
    Yang, Jean Yee Hwa
    Yang, Pengyi
    BMC GENOMICS, 2019, 20 (Suppl 9)