Vision Transformers for Lung Segmentation on CXR Images

被引:7
作者
Ghali R. [1 ]
Akhloufi M.A. [1 ]
机构
[1] Perception, Robotics, and Intelligent Machines (PRIME), Department of Computer Science, Université de Moncton, Moncton, E1A 3E9, NB
基金
加拿大自然科学与工程研究理事会;
关键词
Chest X-rays; Deep learning; Lung segmentation; Medical image analysis; Vision transformers;
D O I
10.1007/s42979-023-01848-4
中图分类号
学科分类号
摘要
Accurate segmentation of the lungs in CXR images is the basis for an automated CXR image analysis system. It helps radiologists in detecting lung areas, subtle signs of disease and improving the diagnosis process for patients. However, precise semantic segmentation of lungs is considered a challenging case due to the presence of the edge rib cage, wide variation of lung shape, and lungs affected by diseases. In this paper, we address the problem of lung segmentation in healthy and unhealthy CXR images. Five models were developed and used in detecting and segmenting lung regions. Two loss functions and three benchmark datasets were employed to evaluate these models. Experimental results showed that the proposed models were able to extract salient global and local features from the input CXR images. The best performing model achieved an F1 score of 97.47%, outperforming recent published models. They proved their ability to separate lung regions from the rib cage and clavicle edges and segment varying lung shape depending on age and gender, as well as challenging cases of lungs affected by anomalies such as tuberculosis and the presence of nodules. © 2023, The Author(s), under exclusive licence to Springer Nature Singapore Pte Ltd.
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共 47 条
  • [1] Kieu S.T.H., Bade A., Hijazi M.H.A., Kolivand H., A survey of deep learning for lung disease detection on medical images: state-of-the-art, taxonomy, issues and future directions, J Imaging, 6, 12, (2020)
  • [2] Calli E., Sogancioglu E., van Ginneken B., van Leeuwen K.G., Murphy K., Deep learning for chest x-ray analysis: a survey, Med Image Anal, 72, (2021)
  • [3] Ghali R., Akhloufi M.A., Arseg: An attention regseg architecture for cxr lung segmentation, IEEE 23Rd International Conference on Information Reuse and Integration for Data Science (IRI), pp. 291-296, (2022)
  • [4] Chen J., Lu Y., Yu Q., Luo X., Adeli E., Wang Y., Lu L., Yuille A.L., Zhou Y., Transunet: Transformers Make Strong Encoders for Medical Image Segmentation, (2021)
  • [5] Valanarasu J.M.J., Oza P., Hacihaliloglu I., Patel V.M., Medical transformer: Gated axial-attention for medical image segmentation, In: Medical Image Computing and Computer Assisted intervention–MICCAI 2021, 2021
  • [6] Valanarasu J.V.M., Unext: Mlp-Based Rapid Medical Image Segmentation Network, (2022)
  • [7] Sudre C., Li W., Vercauteren T., Ourselin S., Cardoso J., Generalised dice overlap as a deep learning loss function for highly unbalanced segmentations, Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support, pp. 240-248, (2017)
  • [8] Yi-De M., Qing L., Zhi-Bai Q., Automated image segmentation using improved pcnn model based on cross-entropy, Proceedings of International Symposium on Intelligent Multimedia, Video and Speech Processing, pp. 743-746, (2004)
  • [9] Shiraishi J., Katsuragawa S., Ikezoe J., Matsumoto T., Kobayashi T., Komatsu K.-I., Matsui M., Fujita H., Kodera Y., Doi K., Development of a digital image database for chest radiographs with and without a lung nodule, Amer J Roentgenol, 174, 1, pp. 71-74, (2000)
  • [10] Jaeger S., Candemir S., Antani S., Wang Y.-X.J., Lu P.-X., Thoma G., Two public chest x-ray datasets for computer-aided screening of pulmonary diseases, Quantit Imaging Med Surg, 4, 6, pp. 475-477, (2014)