Identification of quantitative trait loci for grain size and the contributions of major grain-size QTLs to grain weight in rice

Grain weight, one of the three major components of rice yield, is largely determined by grain size, which is controlled by quantitative trait loci (QTLs). In a previous study, we identified qGS5 as a major QTL for grain width. Here, we report our identification of two more major grain-size QTLs (qGL3 and qGW2a) by using a recombinant inbred line (RIL) population from a cross of two indica varieties, ‘Zhenshan 97’ and ‘SLG’. To investigate the contribution of the three grain-size QTLs to final grain weight, we developed near-isogenic lines (NILs) NIL-qGL3, NIL-qGW2a, and NIL-qGS5 and used these to build the combined QTLs–NIL in the genetic background of ‘Zhenshan 97’ by marker-assisted selection and conventional backcrossing, respectively. A BCF2 population of 957 individuals was developed from the combined QTLs-NIL for further study of the genetic control of grain size. The QTL analysis revealed that qGW2a and qGL3 played more important roles in grain weight gain than qGS5. All three QTLs showed additive effects with respect to grain weight, with no interaction. These results clearly indicate that pyramiding of major grain-size QTLs is a useful approach for improving rice yield.