Expression profiling of formalin-fixed paraffin-embedded primary breast tumors using cancer-specific and whole genome gene panels on the DASL®platform

被引:0
|
作者
Monica M Reinholz
Jeanette E Eckel-Passow
S Keith Anderson
Yan W Asmann
Michael A Zschunke
Ann L Oberg
Ann E McCullough
Amylou C Dueck
Beiyun Chen
Craig S April
Eliza Wickham-Garcia
Robert B Jenkins
Julie M Cunningham
Jin Jen
Edith A Perez
Jian-Bing Fan
Wilma L Lingle
机构
[1] Mayo Clinic,Department of Laboratory Medicine and Pathology
[2] and Informatics Mayo Clinic,Division of Biomedical Statistics
[3] Mayo Clinic,Department of Pathology
[4] Section of Biostatistics,Department of Scientific Research
[5] Illumina Inc.,Division of Pulmonary and Critical Care Medicine
[6] Mayo Clinic,Division of Hematology and Oncology
[7] Mayo Clinic,undefined
来源
BMC Medical Genomics | / 3卷
关键词
Human Epidermal Growth Factor Receptor; FFPE Tissue; Gene Panel; Viral Oncogene Homolog; DASL Assay;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 13 条
  • [1] Analyses and interpretation of whole-genome gene expression from formalin-fixed paraffin-embedded tissue: an illustration with breast cancer tissues
    Muhammad G Kibriya
    Farzana Jasmine
    Shantanu Roy
    Rachelle M Paul-Brutus
    Maria Argos
    Habibul Ahsan
    BMC Genomics, 11
  • [2] Molecular characterisation of formalin-fixed paraffin-embedded (FFPE) breast tumour specimens using a custom 512-gene breast cancer bead array-based platform
    Abramovitz, M.
    Barwick, B. G.
    Willis, S.
    Young, B.
    Catzavelos, C.
    Li, Z.
    Kodani, M.
    Tang, W.
    Bouzyk, M.
    Moreno, C. S.
    Leyland-Jones, B.
    BRITISH JOURNAL OF CANCER, 2011, 105 (10) : 1574 - 1581
  • [3] Molecular characterisation of formalin-fixed paraffin-embedded (FFPE) breast tumour specimens using a custom 512-gene breast cancer bead array-based platform
    M Abramovitz
    B G Barwick
    S Willis
    B Young
    C Catzavelos
    Z Li
    M Kodani
    W Tang
    M Bouzyk
    C S Moreno
    B Leyland-Jones
    British Journal of Cancer, 2011, 105 : 1574 - 1581
  • [4] Evaluation and selection of a non-PCR based technology for improved gene expression profiling from clinical formalin-fixed, paraffin-embedded samples
    Qi, Zhenhao
    Wang, Lisu
    He, Aiqing
    Ma-Edmonds, Manling
    Cogswell, John
    BIOANALYSIS, 2016, 8 (22) : 2305 - 2316
  • [5] Clinical significance of multiple gene detection with a 22-gene panel in formalin-fixed paraffin-embedded specimens of 207 colorectal cancer patients
    Xian Hua Gao
    Guan Yu Yu
    Yong Gang Hong
    Wei Lian
    Hanumant Chouhan
    Yi Xu
    Lian Jie Liu
    Chen Guang Bai
    Wei Zhang
    International Journal of Clinical Oncology, 2019, 24 : 141 - 152
  • [6] Clinical significance of multiple gene detection with a 22-gene panel in formalin-fixed paraffin-embedded specimens of 207 colorectal cancer patients
    Gao, Xian Hua
    Yu, Guan Yu
    Hong, Yong Gang
    Lian, Wei
    Chouhan, Hanumant
    Xu, Yi
    Liu, Lian Jie
    Bai, Chen Guang
    Zhang, Wei
    INTERNATIONAL JOURNAL OF CLINICAL ONCOLOGY, 2019, 24 (02) : 141 - 152
  • [7] Single-Cell RNA Sequencing on Formalin-Fixed and Paraffin-Embedded (FFPE) Tissue Identified Multi-Ciliary Cells in Breast Cancer
    Gonzalez-Martinez, Silvia
    Palacios, Jose
    Carretero-Barrio, Irene
    Lanza, Val F.
    Piqueras, Monica Garcia-Cosio
    Caniego-Casas, Tamara
    Hardisson, David
    Esteban-Rodriguez, Isabel
    Cortes, Javier
    Perez-Mies, Belen
    CELLS, 2025, 14 (03)
  • [8] MethCORR infers gene expression from DNA methylation and allows molecular analysis of ten common cancer types using fresh-frozen and formalin-fixed paraffin-embedded tumor samples
    Trine B. Mattesen
    Claus L. Andersen
    Jesper B. Bramsen
    Clinical Epigenetics, 2021, 13
  • [9] MethCORR infers gene expression from DNA methylation and allows molecular analysis of ten common cancer types using fresh-frozen and formalin-fixed paraffin-embedded tumor samples
    Mattesen, Trine B.
    Andersen, Claus L.
    Bramsen, Jesper B.
    CLINICAL EPIGENETICS, 2021, 13 (01)
  • [10] Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snap frozen cells
    Jinghuan Li
    Paul Smyth
    Richard Flavin
    Susanne Cahill
    Karen Denning
    Sinead Aherne
    Simone M Guenther
    John J O'Leary
    Orla Sheils
    BMC Biotechnology, 7