Prior knowledge driven Granger causality analysis on gene regulatory network discovery

被引:0
作者
Shun Yao
Shinjae Yoo
Dantong Yu
机构
[1] Stony Brook University,Department of Biochemistry and Cell Biology
[2] Brookhaven National Laboratory,Computational Science Center
来源
BMC Bioinformatics | / 16卷
关键词
Time series; Gene expression data; Granger causality; Gene regulatory networks;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 39 条
  • [31] Combination of neuro-fuzzy network models with biological knowledge for reconstructing gene regulatory networks
    Guixia Liu
    Lei Liu
    Chunyu Liu
    Ming Zheng
    Lanying Su
    Chunguang Zhou
    Journal of Bionic Engineering, 2011, 8 : 98 - 106
  • [32] Combination of Neuro-Fuzzy Network Models with Biological Knowledge for Reconstructing Gene Regulatory Networks
    Liu, Guixia
    Liu, Lei
    Liu, Chunyu
    Zheng, Ming
    Su, Lanying
    Zhou, Chunguang
    JOURNAL OF BIONIC ENGINEERING, 2011, 8 (01) : 98 - 106
  • [33] Network motif-based analysis of regulatory patterns in paralogous gene pairs
    Melkus, Gatis
    Rucevskis, Peteris
    Celms, Edgars
    Cerans, Karlis
    Freivalds, Karlis
    Kikusts, Paulis
    Lace, Lelde
    Opmanis, Martins
    Rituma, Darta
    Viksna, Juris
    JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2020, 18 (03)
  • [34] Comparative Analysis of Gene Regulatory Network Components in the Auditory Hindbrain of Mice and Chicken
    Pawlik, Benjamin
    Schlueter, Tina
    Hartwich, Heiner
    Breuel, Saskia
    Heepmann, Lennart
    Nothwang, Hans Gerd
    BRAIN BEHAVIOR AND EVOLUTION, 2016, 88 (3-4) : 161 - 176
  • [35] Data-driven modelling of a gene regulatory network for cell fate decisions in the growing limb bud
    Uzkudun, Manu
    Marcon, Luciano
    Sharpe, James
    MOLECULAR SYSTEMS BIOLOGY, 2015, 11 (07)
  • [36] A flood-based information flow analysis and network minimization method for gene regulatory networks
    Pavlogiannis, Andreas
    Mozhayskiy, Vadim
    Tagkopoulos, Ilias
    BMC BIOINFORMATICS, 2013, 14
  • [37] A flood-based information flow analysis and network minimization method for gene regulatory networks
    Andreas Pavlogiannis
    Vadim Mozhayskiy
    Ilias Tagkopoulos
    BMC Bioinformatics, 14
  • [38] Hilbert transform-based time-series analysis of the circadian gene regulatory network
    Shiju, S.
    Sriram, K.
    IET SYSTEMS BIOLOGY, 2019, 13 (04) : 159 - 168
  • [39] A Multi-Laplacian Prior and Augmented Lagrangian Approach to the Exploratory Analysis of Time-Varying Gene and Transcriptional Regulatory Networks for Gene Microarray Data
    Zhang, Li
    Wu, Ho-Chun
    Ho, Cheuk-Hei
    Chan, Shing-Chow
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 16 (06) : 1816 - 1829