Prior knowledge driven Granger causality analysis on gene regulatory network discovery

被引:0
作者
Shun Yao
Shinjae Yoo
Dantong Yu
机构
[1] Stony Brook University,Department of Biochemistry and Cell Biology
[2] Brookhaven National Laboratory,Computational Science Center
来源
BMC Bioinformatics | / 16卷
关键词
Time series; Gene expression data; Granger causality; Gene regulatory networks;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 39 条
  • [1] Prior knowledge driven Granger causality analysis on gene regulatory network discovery
    Yao, Shun
    Yoo, Shinjae
    Yu, Dantong
    BMC BIOINFORMATICS, 2015, 16
  • [2] Gene regulatory network discovery using pairwise Granger causality
    Tam, Gary Hak Fui
    Chang, Chunqi
    Hung, Yeung Sam
    IET SYSTEMS BIOLOGY, 2013, 7 (05) : 195 - 204
  • [3] Granger Causality: Comparative Analysis of Implementations for Gene Regulatory Networks
    Siyal, M. Y.
    Furqan, M. S.
    Monir, Syed Muhammad G.
    2014 13TH INTERNATIONAL CONFERENCE ON CONTROL AUTOMATION ROBOTICS & VISION (ICARCV), 2014, : 793 - 798
  • [4] Using graph prior to learn network Granger causality
    Zoroddu, Lucas
    Humbert, Pierre
    Oudre, Laurent
    32ND EUROPEAN SIGNAL PROCESSING CONFERENCE, EUSIPCO 2024, 2024, : 2307 - 2311
  • [5] A Granger causality analysis method based on GRBF network
    Chen, Huang
    Wang, Jian-Guo
    Ding, Pangbin
    Ye, Xiang-Yun
    Yao, Yuan
    Chen, He-Lin
    2023 IEEE 12TH DATA DRIVEN CONTROL AND LEARNING SYSTEMS CONFERENCE, DDCLS, 2023, : 1871 - 1876
  • [6] Windowed Granger causal inference strategy improves discovery of gene regulatory networks
    Finkle, Justin D.
    Wu, Jia J.
    Bagheri, Neda
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (09) : 2252 - 2257
  • [7] Integrating Prior Knowledge Using Transformer for Gene Regulatory Network Inference
    Weng, Guangzheng
    Martin, Patrick
    Kim, Hyobin
    Won, Kyoung Jae
    ADVANCED SCIENCE, 2025, 12 (03)
  • [8] Granger-Causality Inference of the Existence of Unobserved Important Components in Network Analysis
    Elsegai, Heba
    ENTROPY, 2021, 23 (08)
  • [9] Extracting neuronal functional network dynamics via adaptive Granger causality analysis
    Sheikhattar, Alireza
    Miran, Sina
    Liu, Ji
    Fritz, Jonathan B.
    Shamma, Shihab A.
    Kanold, Patrick O.
    Babadi, Behtash
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (17) : E3869 - E3878
  • [10] Gene Network Inference Using Forward Backward Pairwise Granger Causality
    Furcian, Mohammad Shaheryar
    Siyal, Mohammad Yakoob
    2015 THIRD INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE, MODELLING AND SIMULATION (AIMS 2015), 2015, : 321 - 324