Integrative profiling of Epstein–Barr virus transcriptome using a multiplatform approach

被引:0
作者
Ádám Fülöp
Gábor Torma
Norbert Moldován
Kálmán Szenthe
Ferenc Bánáti
Islam A. A. Almsarrhad
Zsolt Csabai
Dóra Tombácz
János Minárovits
Zsolt Boldogkői
机构
[1] University of Szeged,Department of Medical Biology, Albert Szent
[2] Carlsbad Research Organization Ltd.,Györgyi Medical School
[3] RT-Europe Research Center,Department of Oral Biology and Experimental Dental Research
[4] University of Szeged,undefined
来源
Virology Journal | / 19卷
关键词
Epstein–Barr virus; Herpesvirus; Transcriptome; Transcript isoform; Splice variant; Transcription start site; Transcription end site; Long-read sequencing; Nanopore sequencing; PacBio sequencing;
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[41]  
Kenney SC(2017)Multi-platform analysis reveals a complex transcriptome architecture of a circovirus Virus Res 14 1-7512
[42]  
Mertz JE(2018)Long-read sequencing uncovers a complex transcriptome topology in varicella zoster virus BMC Genom 87 1172-53
[43]  
Liu P(2019)Template-switching artifacts resemble alternative polyadenylation BMC Genom 84 13053-5412
[44]  
Speck SH(2018)The Epstein Barr virus circRNAome PLoS Pathog 3 385-11644
[45]  
Schaeffner M(2013)Whole-genome sequencing of the akata and mutu Epstein–Barr virus strains J Virol 24 261-14111
[46]  
Mrozek-Gorska P(2010)Quantitative and qualitative RNA-seq-based evaluation of Epstein–Barr virus transcription in type i latency Burkitt’s lymphoma cells J Virol 286 745-10534
[47]  
Buschle A(2012)Signals for pre-mRNA cleavage and polyadenylation Wiley Interdiscip Rev RNA 19 158-7
[48]  
Woellmer A(1981)Nucleotide sequences in Xenopus 5S DNA required for transcription termination Cell 106 7507-19760
[49]  
Tagawa T(1999)Termination sequence requirements vary among genes transcribed by RNA polymerase III J Mol Biol 9 e1003156-12186
[50]  
Cernilogar FM(2018)Functional 5’ UTR mRNA structures in eukaryotic translation regulation and how to find them Nat Rev Mol Cell Biol 483 44-14