Computational 3D genome modeling using Chrom3D

被引:0
|
作者
Jonas Paulsen
Tharvesh Moideen Liyakat Ali
Philippe Collas
机构
[1] Institute of Basic Medical Sciences,Department of Molecular Medicine
[2] Faculty of Medicine,Department of Immunology
[3] University of Oslo,undefined
[4] Oslo University Hospital,undefined
来源
Nature Protocols | 2018年 / 13卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Chrom3D is a computational platform designed to simulate the spatial positioning of chromosome domains relative to each other and to the nuclear periphery, starting from, for example, chromosome conformation capture and lamin ChIP-sequencing data.
引用
收藏
页码:1137 / 1152
页数:15
相关论文
共 50 条
  • [21] 3D genome organization
    Silahtaroglu, Asli
    Bridger, Joanna M. M.
    Lei, Elissa P. P.
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [22] Diploid genome in 3D
    Lei Tang
    Nature Methods, 2018, 15 : 858 - 858
  • [23] Computational Modeling and Characterization of 3D Woven Fabrics and their Composites
    Behera, B. K.
    Dash, B. P.
    TEXTILE BIOENGINEERING AND INFORMATICS SYMPOSIUM PROCEEDINGS, VOLS 1 AND 2, 2012, : 601 - +
  • [24] Computational Approach to 3D Modeling of the Lymph Node Geometry
    Kislitsyn, Alexey
    Savinkov, Rostislav
    Novkovic, Mario
    Onder, Lucas
    Bocharov, Gennady
    COMPUTATION, 2015, 3 (02): : 222 - 234
  • [25] Computational Aspects of Fabrication Modeling, Design, and 3D Printing
    Bickel, Bernd
    Alexa, Marc
    IEEE COMPUTER GRAPHICS AND APPLICATIONS, 2013, 33 (06) : 24 - 25
  • [26] 3D Computational Modeling of Bleb Initiation Dynamics.
    Strychalski, W.
    MOLECULAR BIOLOGY OF THE CELL, 2017, 28
  • [27] 3D Object Modeling using Sketches
    Kyratzi, Sofia
    Sapidis, Nickolas
    INFORMATION RESOURCES MANAGEMENT JOURNAL, 2011, 24 (04) : 27 - 49
  • [28] 3D Genome Structure Modeling by Lorentzian Objective Function
    Trieu, Tuan
    Cheng, Jianlin
    ACM-BCB' 2017: PROCEEDINGS OF THE 8TH ACM INTERNATIONAL CONFERENCE ON BIOINFORMATICS, COMPUTATIONAL BIOLOGY,AND HEALTH INFORMATICS, 2017, : 641 - 641
  • [29] 3D genome structure modeling by Lorentzian objective function
    Trieu, Tuan
    Cheng, Jianlin
    NUCLEIC ACIDS RESEARCH, 2017, 45 (03) : 1049 - 1058
  • [30] Uncovering the Principles of Genome Folding by 3D Chromatin Modeling
    Yildirim, Asli
    Boninsegna, Lorenzo
    Zhan, Yuxiang
    Alber, Frank
    COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2022, 14 (06):